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Report for CCDS29538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29538.1 Public Mus musculus 19 Slc22a6 23 108 98 CCDS HistoryNCBI Gene:18399Re-query CCDS DB by CCDS ID:29538.1Re-query CCDS DB by GeneID:18399See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010250.3 ENSMUSP00000010250.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010250.3Link to Ensembl Protein Viewer:ENSMUSP00000010250.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000010250Re-query CCDS DB by Protein ID:ENSMUSP00000010250
Original member Current member NCBI NM_008766.3 NP_032792.2 Accepted alive Link to Nucleotide Sequence:NM_008766.3Link to Protein Sequence:NP_032792.2Re-query CCDS DB by Nucleotide ID:NM_008766Re-query CCDS DB by Protein ID:NP_032792Link to BLAST:NP_032792.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032792.2 545 Q8VC69 545 100% 0 0

Chromosomal Locations for CCDS 29538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8618296 8618646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8619003 8619106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8619315 8619469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8621191 8621359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8621786 8621909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8622042 8622157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8623464 8623678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8623820 8623928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8625633 8625836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8626121 8626211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGCCTTCAATGACCTCCTGAAACAGGTGGGGGGTGTCGGACGCTTCCAGCTGATCCAGGTCACCATGG
TGGTTGCTCCCCTACTGCTGATGGCTTCCCACAACACCCTGCAGAACTTCACTGCTGCTATCCCCGCTCA
CCACTGCCGCCCACCTGCTAATGCCAACCTCAGCAAAGATGGAGGTCTGGAGGCCTGGCTGCCCCTGGAC
AAGCAAGGACGACCCGAATCTTGCCTCCGCTTTCCTTTCCCGCACAATGGCACAGAGGCCAATGGCACCG
GAGTCACAGAGCCCTGCCTTGATGGCTGGGTCTATGACAACAGCACCTTCCCTTCAACCATCGTGACTGA
GTGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTA
CTGGGAGCCATGATGTTTGGCTACCTGGCGGACAGGCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACC
TGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCT
CCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAAACATGGAGTGGATGCCTATT
CACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTA
TCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCAT
CTACTCTTGGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGA
GCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAGGTGCTCC
AGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCC
CACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTGGTTTGCCACTAGCTTTGCCTACTACGGGCTG
GTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGC
CTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCT
GCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGGGCCATACAATCATTCGCACATCCCTG
GCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACC
CCACAATGATTCGGCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCC
ACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCC
GCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGA
AGAGCAGGAGCAGAGGAAAGCAGAAGCAACAGCAGCTGGAACAGCAGAAGCAGATGATACCACTCCAGGT
CTCAACACAAGAGAAGAACGGACTCTGA

Translation (545 aa):
MAFNDLLKQVGGVGRFQLIQVTMVVAPLLLMASHNTLQNFTAAIPAHHCRPPANANLSKDGGLEAWLPLD
KQGRPESCLRFPFPHNGTEANGTGVTEPCLDGWVYDNSTFPSTIVTEWNLVCSHRAFRQLAQSLFMVGVL
LGAMMFGYLADRLGRRKVLILNYLQTAVSGTCAAYAPNYTVYCIFRLLSGMSLASIAINCMTLNMEWMPI
HTRAYVGTLIGYVYSLGQFLLAGIAYAVPHWRHLQLAVSVPFFVAFIYSWFFIESARWYSSSGRLDLTLR
ALQRVARINGKQEEGAKLSIEVLQTSLQKELTLNKGQASAMELLRCPTLRRLFLCLSMLWFATSFAYYGL
VMDLQGFGVSMYLIQVIFGAVDLPAKFVCFLVINSMGRRPAQLASLLLAGICILVNGIIPRGHTIIRTSL
AVLGKGCLASSFNCIFLYTGELYPTMIRQTGLGMGSTMARVGSIVSPLISMTAEFYPSIPLFIFGAVPVA
ASAVTALLPETLGQPLPDTVQDLKSRSRGKQKQQQLEQQKQMIPLQVSTQEKNGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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