NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29610.1 Public Mus musculus 19 Mrpl16 23 108 98 CCDS HistoryNCBI Gene:94063Re-query CCDS DB by CCDS ID:29610.1Re-query CCDS DB by GeneID:94063See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167199.2 ENSMUSP00000128915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167199.2Link to Ensembl Protein Viewer:ENSMUSP00000128915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167199Re-query CCDS DB by Protein ID:ENSMUSP00000128915
Original member Current member NCBI NM_025606.3 NP_079882.2 Accepted alive Link to Nucleotide Sequence:NM_025606.3Link to Protein Sequence:NP_079882.2Re-query CCDS DB by Nucleotide ID:NM_025606Re-query CCDS DB by Protein ID:NP_079882Link to BLAST:NP_079882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079882.2 251 Q99N93 251 100% 0 0

Chromosomal Locations for CCDS 29610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11770470 11770524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11770802 11770867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11772875 11773023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11774148 11774633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGTGGAGGCTGTTGACGCGCGTCCCCGCGCCGCTCCTGCGGATGCACTTTTCAGATTCTTGGGCAGCCC
TTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAAATGTCTCCATCCCTGAAAG
GTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAG
GACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTGGCACTTGGCG
GTGGTTATCTCCATTGGGGCCATTTTGAAATGATGCGCTTGACAATCAACCGCTTTATGGATCCCAAGAA
CATGTTTGCCATCTGGCGAGTGCCAGCCCCTTTCAAGCCCATCACTCGCAAAGGTGTTGGGCAGCGCATG
GGGGGAGGTAAAGGTGCCATCGATCACTATGTGACACCTGTGAAGACTGGCTGCCTAGTAGTAGAGATGG
GTGGACGGTGTGAATTTGAAGAGGTAAAAGGTATCCTGAACCAAGTTGCTCACAAGTTACCCTTTCCGGC
AAAGGCTGTGAGCCGTAAGACTCTAGAGAGGATGCACCAAAATCAAAGAGAGAGAGAACTTAACAACCAA
AACCCCTGGACCTTTGAGCACATAGCCACTGCCAACATGTTTGGCATACGGAAATTCCTGAGCCCATATG
ACTTGACGCAGAAAGGGCGATACTGGGGCAAATTCTACATGCCCAAGCGTGTGTAG

Translation (251 aa):
MWRLLTRVPAPLLRMHFSDSWAALPTSAGLKTLLPVPTFENVSIPERSKLKFVERVPLVPKVRREPKNLK
DIRGPSTEATDFTEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQRM
GGGKGAIDHYVTPVKTGCLVVEMGGRCEFEEVKGILNQVAHKLPFPAKAVSRKTLERMHQNQRERELNNQ
NPWTFEHIATANMFGIRKFLSPYDLTQKGRYWGKFYMPKRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH