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Report for CCDS2972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2972.1 Public Homo sapiens 3 CFAP44 24 110 108 CCDS HistoryNCBI Gene:55779Re-query CCDS DB by CCDS ID:2972.1Re-query CCDS DB by GeneID:55779See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295868.6 ENSP00000295868.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295868.6Link to Ensembl Protein Viewer:ENSP00000295868.2Re-query CCDS DB by Nucleotide ID:ENST00000295868Re-query CCDS DB by Protein ID:ENSP00000295868
Original member Current member NCBI NM_018338.3 NP_060808.2 Accepted alive Link to Nucleotide Sequence:NM_018338.3Link to Protein Sequence:NP_060808.2Re-query CCDS DB by Nucleotide ID:NM_018338Re-query CCDS DB by Protein ID:NP_060808Link to BLAST:NP_060808.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060808.2 982 Q96MT7-1 982 100% 0 0

Chromosomal Locations for CCDS 2972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113363130 113363307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113363477 113363532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113366039 113366309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113373411 113373556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113379306 113379551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113380899 113381060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113395750 113395860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113396518 113396727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113399906 113400000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113400545 113400644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113401240 113401287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113401584 113401739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113403852 113404016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113406927 113407041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113409106 113409322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113416525 113416627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113420017 113420179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113426124 113426277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113427187 113427339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113433565 113433664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2949 nt):
ATGAAGGAACCAGATGATCAGGATACTGATGGGGAGAAATCAGTTACATCAAAGAGTGATGGGAAGAAGT
CTCTGAGGTCTTCTAAATCAGAATCAAGATCTCCTGTTCAAGAAGATAACACATTTTTAGAAGATGACAC
AGATGAAACATTTACCAAAGGGGAAGGATCATATTTAGAAGAAGACTCAGATGAGGAACGTTTGGAAGGA
AGTTTGAGTTCATTTCAGTATGGTGATTTGCAAAGCACTACAGTACCTCAGCAAACCCCTGCTCCAGCTG
TGGAAGAAGCAGAGGAGGAAGTTAAGAAGAAAATATCAGAGAGCTTCTTCTATGATTATATGGAGCTTGC
TTCGATGCCTTTTGTGACTCTGGATTCAAACATACCACTGGATCTTCTCACACTTGTACATTCTTTTGGT
TATGACTGTAGAAAGCGAGCCAACCTACAACTTCTGGACGACAGTATCGCCATATACATAGCTGGGAACC
AACTGATCTTTCTGAATTTGAAAACCAAGGAACAGATCTACCTGCGAAGTAGCAGTGGTGAAGGAATTGG
CGTCATTGGGGTTCATCCACATAAAACTTATTTCACAGTAGCTGAAAAAGGGAGTTTTCCAGATATTATC
ATCTATGAATATCCTTCTCTGAGACCATACAGAGTCCTTCGAGATGGGACTGAGAAGGGATATGCTTATG
TGGACTTTAACTACAGCGGTAACTTGCTGGCCTCTGTTGGTAGTAACCCTGACTACACACTGACTATCTG
GAACTGGAAAGAAGAACAACCCATACTAAGGACAAAAGCTTTTTCTCAGGAAGTTTTTAAGGTTACTTTC
AATCCTGATAAGGAAGAGCAGCTTACTACATCGGGATCAGGCCACATCAAGTTCTGGGAAATGGCTTTTA
CGTTCACCGGTCTCAAGCTGCAGGGATCACTAGGTCGATTTGGCAAAACAATCACTACTGATATAGAAGG
CTACATGGAGCTCCCAGATGGGAAGGTGCTCTCAGGGTCAGAATGGGGCAACATGCTGCTTTGGGAAGGT
GGTCTGATCAAAGTGGAGCTCTGTCGAGGGACAAGCAAGTCATGTCACAATGGTCCCATTAACCAGATAA
TGCTGTATGAGGGTGAAGTTATCACTGTTGGGTCAGATGGATATGTTAGGATATGGGATTTTGAGACAAT
AGACACTGCTGATGTAATAGATGAGACTGGATTGTTGGAGATTGAGCCTATTAATGAACTTCAAGTAGAC
AAGAATGTGAATCTCTTCTCTATGATAAAAATGAATGAAACTGGAAATAACTTTTGGTTGGCTCAGGATG
CCAATGGAGCCATATGGAAGCTTGACCTTAGTTTTTCAAATATTACCCAGGACCCAGAATGCCTCTTCTC
CTTCCATTCTGGAGCTATTGAAGCCGTGGCTGTTTCTCCTCTCACTTATCTCATGGCCACAACTGCCTTG
GACTGCTCTGTTCGAATCTATGATTTTGCTAGCAAAACTCCTTTGGCCCAGATGAAATTCAAACAAGGAG
GTACTGCCCTTGTTTGGGTACCCCGAATGGTAAACTTCACTGGAGCACAAATTATTGTAGGATTTGAAGA
TGGAGTTGTTCGAATTCTTGAACTTTATGATCCAAAAGGGCTCACGATTTTTGCGGGACGGAAGAAAATT
TTGGATGCTGATATTCAGTTGAAACAGGTTTTCAAACCCCATACTGCTTGTGTCACTGCTTTAGCTTATG
AACGTGATGGGGAAATTCTAGCCACAGGGAGTAAAGATCAAACTGTTTTCTTCTTTGAAGTGGAAAGGGA
TTATAAGCCGATTGGTTATATTAATACTCCTGGACCTGTGTGTCAGTTAATGTGGTCTCCCATGTCTCAT
CCTGAAAGTACTTTACTAATTATCTGTGAAAATGGCTATATTCTTGAAGCTCCACTTCCAACCATAAAGC
AAGAAGAGGATGATCATGATGTAGTCTCCTATGAAATCAAAGACATGTGCATAAAATGTTTCCATTTTTC
AAGTGTCAAATCTAAGATTCTGAGATTAATAGAAATTGAAAAGAGGGAGAGACAAAGGGAGTTGAAGGAG
AAAATAAGGGAAGAAAGGAGGAACAAGCTAGCAGCAGAGATGGGAGAAGATGGAGAAAAAGAATTTCAGG
AGGAGGAAGAGGAGAAAGAGGAGGAGGAGGAGGAAGAAGAGCCATTACCTGAAATATTTATTCCGTCAAC
CCCCTCTCCCATCCTCTGTGGATTTTACTCAGAGCCAGGGAAGTTCTGGGTTTCTTTGGGTGGCTATGAT
TCTGGTTTTCTATATCACTGTGAGTTCCCCCCTTGTGATGAAAGCAGTGATTTCAAAGAACAAAAAGATG
AACCTATTGATGTCCGTTATCTTGCGGATACAGAGGACAATCCCATCCAAACTATCACTTTCAACATTAA
CAAAGTTATGATGTTTTGTGGAATGAAAAATGGAGCAATTCGAGTCTATGTCCTAAATCAAAATGATCCT
TCATTGACCAGTTTGGTGGACTACTGGCACTTCAATATGCATGACAATAATTATGGATGTATTAAAAGTA
TTGCTAATAGCTTTGATGATCGTTTCTTGGTGACTGCTGGAGCAGATGGCAATATCTTTGTTTTCAACAT
TTTTTCTGAATTTATGCTAAGGAAAGACATGAAGGCCAAAGTTCCATCTCCCAGGTTTGGAATTGAAACA
GAGCCAATTCCAGAAGACATTGAAGATCCCAAAGCCTACAGTATCGAGAATGCTAGGAGAAAAAGAGAAC
ATGACAAGTTAATGAAAGAAGTGGGAGAAATAAAGGCACGGAAGAGAGAGCAAATCAAAGCTTTGAGGAG
TGAATTTTGTAATCTATTAGAAATGAATGAAAAATTACCAAAGCATATGCAGTTTAAACGAACAGTAAGC
CTAATATAA

Translation (982 aa):
MKEPDDQDTDGEKSVTSKSDGKKSLRSSKSESRSPVQEDNTFLEDDTDETFTKGEGSYLEEDSDEERLEG
SLSSFQYGDLQSTTVPQQTPAPAVEEAEEEVKKKISESFFYDYMELASMPFVTLDSNIPLDLLTLVHSFG
YDCRKRANLQLLDDSIAIYIAGNQLIFLNLKTKEQIYLRSSSGEGIGVIGVHPHKTYFTVAEKGSFPDII
IYEYPSLRPYRVLRDGTEKGYAYVDFNYSGNLLASVGSNPDYTLTIWNWKEEQPILRTKAFSQEVFKVTF
NPDKEEQLTTSGSGHIKFWEMAFTFTGLKLQGSLGRFGKTITTDIEGYMELPDGKVLSGSEWGNMLLWEG
GLIKVELCRGTSKSCHNGPINQIMLYEGEVITVGSDGYVRIWDFETIDTADVIDETGLLEIEPINELQVD
KNVNLFSMIKMNETGNNFWLAQDANGAIWKLDLSFSNITQDPECLFSFHSGAIEAVAVSPLTYLMATTAL
DCSVRIYDFASKTPLAQMKFKQGGTALVWVPRMVNFTGAQIIVGFEDGVVRILELYDPKGLTIFAGRKKI
LDADIQLKQVFKPHTACVTALAYERDGEILATGSKDQTVFFFEVERDYKPIGYINTPGPVCQLMWSPMSH
PESTLLIICENGYILEAPLPTIKQEEDDHDVVSYEIKDMCIKCFHFSSVKSKILRLIEIEKRERQRELKE
KIREERRNKLAAEMGEDGEKEFQEEEEEKEEEEEEEEPLPEIFIPSTPSPILCGFYSEPGKFWVSLGGYD
SGFLYHCEFPPCDESSDFKEQKDEPIDVRYLADTEDNPIQTITFNINKVMMFCGMKNGAIRVYVLNQNDP
SLTSLVDYWHFNMHDNNYGCIKSIANSFDDRFLVTAGADGNIFVFNIFSEFMLRKDMKAKVPSPRFGIET
EPIPEDIEDPKAYSIENARRKREHDKLMKEVGEIKARKREQIKALRSEFCNLLEMNEKLPKHMQFKRTVS
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Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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