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Report for CCDS29833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29833.1 Public Mus musculus 19 Nkx2-3 23 108 98 CCDS HistoryNCBI Gene:18089Re-query CCDS DB by CCDS ID:29833.1Re-query CCDS DB by GeneID:18089See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057178.10 ENSMUSP00000050933.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057178.10Link to Ensembl Protein Viewer:ENSMUSP00000050933.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000057178Re-query CCDS DB by Protein ID:ENSMUSP00000050933
Original member Current member NCBI NM_008699.2 NP_032725.1 Accepted alive Link to Nucleotide Sequence:NM_008699.2Link to Protein Sequence:NP_032725.1Re-query CCDS DB by Nucleotide ID:NM_008699Re-query CCDS DB by Protein ID:NP_032725Link to BLAST:NP_032725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032725.1 362 P97334 362 100% 0 0

Chromosomal Locations for CCDS 29833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43612501 43612849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43614306 43615045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGATGTTACCAAGCCCGGTCACCTCCACCCCTTTCTCAGTCAAAGACATTTTGAATCTGGAGCAGCAGC
GGCACTTCCACGGAGCTCACTTGCAGGCGGAATTGGAGCAGCACTTCCACTCGGCACCCTGCATGCTGGC
CACGGCTGAAGGGACGCAGTTTTCCGATGCAGGGGAGGAGGACGAGGAAGAAGAGGGAGAGAAACTGTCC
TATTTGAACTCACTAGCTGCTGCCGAGGGCCATGGAGATTCGGGTCTCTGTCCTCAGAGCTATGTCCATA
CAGTTCTCCGAGACGCTTGCAGCGGGCCCAAGGAACAAGAAGAGGAGGTTGTGAGCGAACGGAGCCAAAA
AAGCTGTCAGTTGAAGAAGTCTCTGGAAGCGGCGGGAGACTGTAAGACGAGCGAGGACGGCGAGAGGCCG
AAGCCGCGGAGCCGCCGGAAGCCCCGGGTGCTCTTCTCGCAAGCTCAGGTCTTTGAGCTGGAGCGCAGGT
TCAAGCAGCAGCGGTACCTGTCGGCGCCCGAGCGCGAGCATCTCGCCAGCAGCCTGAAGCTCACGTCCAC
GCAGGTGAAAATCTGGTTCCAGAATCGCAGGTACAAGTGCAAGAGACAGCGGCAGGATAAGTCCCTGGAG
CTGGGGACGCACGCGCCGCCGCCGCCACCCCGCCGCGTGGCAGTGCCGGTGCTCGTGCGGGACGGCAAGC
CGTGCGTCACGCCCAGCGCACAAACCTACGGCTCGCCCTACGGCGTGGGCGCCGGCGCCTACTCCTACAA
CAGCTTCCCCGCCTACGGCTACGGGAACTCGGCCGCCGCAGCCGCTGCAGCCGCCGCAGCCGCAGCAGCA
GCGGCGGCTTACAGCGGCAGCTACGGCTGCGCCTATCCGACCGGTGGCGGCGGTGGTGGTGGCGGCACGG
CCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTGGATCCTTTGTGAACGTGAG
CAACCTGGGAGGCTTCGGCAGCGGCGGCGGCGCGCAACCCTTGCATCAAGGTGCTGCAGCCGGGTCCGCG
TGCACGCAGGGGACTTTGCAGGGCATCAGGGCTTGGTAA

Translation (362 aa):
MMLPSPVTSTPFSVKDILNLEQQRHFHGAHLQAELEQHFHSAPCMLATAEGTQFSDAGEEDEEEEGEKLS
YLNSLAAAEGHGDSGLCPQSYVHTVLRDACSGPKEQEEEVVSERSQKSCQLKKSLEAAGDCKTSEDGERP
KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLE
LGTHAPPPPPRRVAVPVLVRDGKPCVTPSAQTYGSPYGVGAGAYSYNSFPAYGYGNSAAAAAAAAAAAAA
AAAYSGSYGCAYPTGGGGGGGGTASAATTAMQPACSATGGGSFVNVSNLGGFGSGGGAQPLHQGAAAGSA
CTQGTLQGIRAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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