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Report for CCDS29841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29841.1 Public Mus musculus 19 Cyp2c23 23 108 98 CCDS HistoryNCBI Gene:226143Re-query CCDS DB by CCDS ID:29841.1Re-query CCDS DB by GeneID:226143See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026211.9 ENSMUSP00000026211.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026211.9Link to Ensembl Protein Viewer:ENSMUSP00000026211.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026211Re-query CCDS DB by Protein ID:ENSMUSP00000026211
Original member Current member NCBI NM_001001446.3 NP_001001446.3 Accepted alive Link to Nucleotide Sequence:NM_001001446.3Link to Protein Sequence:NP_001001446.3Re-query CCDS DB by Nucleotide ID:NM_001001446Re-query CCDS DB by Protein ID:NP_001001446Link to BLAST:NP_001001446.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001446.3 494 E9Q5K4-1 494 100% 0 0

Chromosomal Locations for CCDS 29841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44005441 44005622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44007024 44007165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44012283 44012470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44013576 44013717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44014904 44015080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44015666 44015826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44016736 44016885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44021562 44021724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44029008 44029187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGAGCTGCTGGGTCTCCCTACGCTTGCTCTCCTGGTTTTGGTGATGTCCCTCAGCCTCCTTTCAGTGT
GGACAAAAATGCGCACTGGGGGGAGACTGCCCCCTGGCCCCACTCCACTTCCCATTATTGGGAATATACT
GCAATTGGACCTCAAAGACATCCCTGCATCGCTTTCCAAGCTGGCCAAAGAGTATGGGCCTGTTTACACT
CTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATC
AAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATGGAATTGT
TTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATG
GGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAG
AAGCTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTT
CAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTAC
CAACTGAACTCTATATGGATCCAGATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGC
ATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGA
GTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAGGAGAAACAC
AACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAG
AGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAGCCAAAGT
TCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCC
TATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTG
TGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAGGGCACCGCTGTGTTCCCGTTTCTGTCTTC
CATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAAT
GGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCGGGAAGCGATCCTGTGTTGGCGAGGGTT
TGGCCCGCATGGAGCTCTTCCTGTTCTTCACCACTATCCTGCAAAAATTTTCCCTAAAGGCTCTGGTGGA
GCCAAAGGACCTTGATATCAAGCCTGTTACTACTGGGCTTTTCAACTTGCCACCGCCTTACAAGCTGCGC
CTTGTTCCAAGATAG

Translation (494 aa):
MELLGLPTLALLVLVMSLSLLSVWTKMRTGGRLPPGPTPLPIIGNILQLDLKDIPASLSKLAKEYGPVYT
LYFGSWPTVVLHGYDVVKEALLNQGDEFLGRGPLPIIEDSQKGHGIVFSEGERWKLLRRFSLMTLKNFGM
GKRSLEERVQEEARCLVEELHKTEAQPFDPTFILACAPCNVICSILFNERFPYNDKTFLNLMDLLNKNFY
QLNSIWIQMYNLWPTIMKYIPGKHREFSKRLGGVKNFILEKVKEHQESLDPANPRDYIDCFLSKIEEEKH
NLKSDFNLENLAICGSNLFTAGTETTSTTLRFGLLLLVKHPEVQAKVHEELDRVIGRHQPPSMKDKMKLP
YTDAVLHEIQRYITLLPSSLPHAVVQDTKFRHYVIPKGTAVFPFLSSILLDQKEFPNPEKFDPGHFLDKN
GCFKKTDYFVPFSLGKRSCVGEGLARMELFLFFTTILQKFSLKALVEPKDLDIKPVTTGLFNLPPPYKLR
LVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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