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Report for CCDS29862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29862.1 Public Mus musculus 19 Dpcd 23 108 98 CCDS HistoryNCBI Gene:226162Re-query CCDS DB by CCDS ID:29862.1Re-query CCDS DB by GeneID:226162See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047057.8 ENSMUSP00000045683.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047057.8Link to Ensembl Protein Viewer:ENSMUSP00000045683.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047057Re-query CCDS DB by Protein ID:ENSMUSP00000045683
Original member Current member NCBI NM_172639.3 NP_766227.1 Accepted alive Link to Nucleotide Sequence:NM_172639.3Link to Protein Sequence:NP_766227.1Re-query CCDS DB by Nucleotide ID:NM_172639Re-query CCDS DB by Protein ID:NP_766227Link to BLAST:NP_766227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766227.1 203 Q8BPA8-1 203 100% 0 0

Chromosomal Locations for CCDS 29862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45560644 45560707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45564911 45564991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45571885 45572009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45572405 45572538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45576993 45577095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45577471 45577575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGCGGTGACTAGCTGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGAAGA
GGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACT
CCTTGTGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAG
CCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCA
TGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAG
TGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAAGTACTACAAGAAGTTC
TCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACT
GCACCCTGATAATCTCTTATCAGAAGCCAAAGGAGGTCATGGCGGCTGAGTCAGAGTTACAGAAGGAGTT
AAAGAAGGTAAAGACGGCCCACGGCAGTGCTGGGGACTGTAAGACGCAGTAG

Translation (203 aa):
MAVTSWLEVLRSAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGE
PVPSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKF
SIPDLDRHQLPLEDSALSFAHANCTLIISYQKPKEVMAAESELQKELKKVKTAHGSAGDCKTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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