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Report for CCDS29918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29918.1 Public Mus musculus 19 Nhlrc2 23 108 98 CCDS HistoryNCBI Gene:66866Re-query CCDS DB by CCDS ID:29918.1Re-query CCDS DB by GeneID:66866See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29918.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071423.6 ENSMUSP00000071370.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071423.6Link to Ensembl Protein Viewer:ENSMUSP00000071370.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071423Re-query CCDS DB by Protein ID:ENSMUSP00000071370
Original member Current member NCBI NM_025811.3 NP_080087.1 Accepted alive Link to Nucleotide Sequence:NM_025811.3Link to Protein Sequence:NP_080087.1Re-query CCDS DB by Nucleotide ID:NM_025811Re-query CCDS DB by Protein ID:NP_080087Link to BLAST:NP_080087.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080087.1 725 Q8BZW8 725 100% 0 0

Chromosomal Locations for CCDS 29918.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56548683 56548860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56551759 56551911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56570416 56570871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56574758 56574879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56576155 56576284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56588170 56588269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56591576 56591807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56592393 56592515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56593660 56593866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56594800 56595019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56597256 56597512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGCGGCTCCCGGAGCGCGCGGCGCGAGCCTCTCGGGCCTGCTGCCCGCGCAGACCTCGCTCGAGTACG
CCCTGCTGGACGCCGTCACCCAGCAAGAGAAGGATGAGTTGGTCTACCAGTATCTGCAGAAGGTGGACGG
CTGGGAGCAGGACCTAGCGGTGCCCGAGTTTCCGGAAGGCTTAGAATGGCTGAACACGGAGGAGCCTCTG
TCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCA
TTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAGATGGCCTTCTGATTGTCGG
TGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAAC
ATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAA
CACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACT
ATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGA
ATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATG
CTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCAT
TCAGAGCAGCATTGGAGGACCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCT
CCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAGA
TAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGG
CGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAGGTTCAGAGGTC
CAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTG
GCACACTGCCAAAGAAAAGTGACCTAAAAAAAGGAACCTGCATTCGTTTTGCTGGAAGTGGAAATGAAGA
GAACCGAAACAACGCATATCCTCACAAGGCAGGCTTTGCCCAGCCGTCAGGCCTCGCTCTCGCCTCAGAA
GAGCCCTGGAGCTGCCTCTTTGTGGCTGACAGTGAGAGCAGCACCGTGCGGACCGTCTCGCTGAGAGACG
GAGCTGTGAAGCACCTCGTAGGCGGAGAGCGAGACCCCATGAATTTATTTGCTTTTGGTGATGTTGATGG
AGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTAC
GTGGCCGACTCCTACAATCACAAGATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAG
GGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTG
TATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTA
GAAGCAAGAACAGTTTCTGTGCTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTA
GAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGT
GCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGC
GCGCCCAGCTGCTGGTTCCTGGAAGCTGAAGGCAATGAATGGCTACTTCAAGAACAGACCCCATCTGGAG
ACATAGAGAATATTTCCAATCAGCCGGCGATTTCCCTGCAGATTCCTACCCATTGCTTGTCACTGGAAGC
TGTGGTGTCTGTCGTCGTGTTTCTTTATTACTGCAGTGCAGACAGCAGCGCATGTATGATGAAGGGAGTC
GTGTTCAGGCAGCCTTTGCAGATAACCAGCACCCAGCCAGCTTGTGCAGCTCCTGTAGAGCTCGCATACG
CATTCTAG

Translation (725 aa):
MAAPGARGASLSGLLPAQTSLEYALLDAVTQQEKDELVYQYLQKVDGWEQDLAVPEFPEGLEWLNTEEPL
SIYKDLCGKVVVLDFFTYCCINCIHVLPDLHALERRFSDKDGLLIVGVHSAKFPNEKVLDNIKSAVLRYN
ITHPVVNDADASLWQELEVSCWPTLVILGPRGNLLFSLIGEGHRDKLFSYTSIALKYYKDRGQIRDGKIG
IKLFKESLPPSPLLFPGKVAVDHATGRLVVADTGHHRILVIQKNGRIQSSIGGPNPGRKDGMFSESSFNS
PQGVAIADNVIYVADTENHLIRKIDLEAEKVTTVAGVGIQGTDTEGGEEGDKQPISSPWDVALGTSGSEV
QRNDILWIAMAGTHQIWALLLDSGTLPKKSDLKKGTCIRFAGSGNEENRNNAYPHKAGFAQPSGLALASE
EPWSCLFVADSESSTVRTVSLRDGAVKHLVGGERDPMNLFAFGDVDGAGINAKLQHPLGVAWDEERQVLY
VADSYNHKIKVVDPKTKGCTTLAGTGDASDASSSFAESAFNEPGGLCIGESGRLLYVADTNNHQIKVMDL
EARTVSVLPVCKSDSAVVDGSFPREKQKTVPKVPKSAAHIGLPPVTVHPGQALQLRLKLQLPPGAKLTEG
APSCWFLEAEGNEWLLQEQTPSGDIENISNQPAISLQIPTHCLSLEAVVSVVVFLYYCSADSSACMMKGV
VFRQPLQITSTQPACAAPVELAYAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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