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Report for CCDS29924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29924.1 Public Mus musculus 19 Afap1l2 23 108 98 CCDS HistoryNCBI Gene:226250Re-query CCDS DB by CCDS ID:29924.1Re-query CCDS DB by GeneID:226250See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122359.7 ENSMUSP00000112387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122359.7Link to Ensembl Protein Viewer:ENSMUSP00000112387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122359Re-query CCDS DB by Protein ID:ENSMUSP00000112387
Original member Current member NCBI NM_146102.2 NP_666214.1 Accepted alive Link to Nucleotide Sequence:NM_146102.2Link to Protein Sequence:NP_666214.1Re-query CCDS DB by Nucleotide ID:NM_146102Re-query CCDS DB by Protein ID:NP_666214Link to BLAST:NP_666214.1

Chromosomal Locations for CCDS 29924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56913382 56913408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56914125 56914253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56914370 56914563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56915672 56915827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56916062 56916242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56916324 56916572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56917126 56917237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56917982 56918127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56920377 56920588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56922935 56923039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56923533 56923617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56925067 56925156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56928249 56928428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56930056 56930261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56937235 56937325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56943445 56943539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56944705 56944756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAGTTCCCGAGGAGCAGGGTC
CACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCC
CAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAG
GCTGAGCCATTTGACAGATCCATCAATGAGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATG
AGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGAT
GCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGT
GTGATCAGGGACACCAGGCTCTTGTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACC
TGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACC
GATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGGTCATC
CAGGAGGTGAGTGGCCTGCCTTCTGAAGGAGCCTCAGAGGGAAACCAGTACACACCAGATGCCCAGCGCC
TCAACTGTCAGAAACCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGG
CCACCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTT
ATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCAGCTACC
TGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTA
CCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGAT
CCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCA
AGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGA
AGAGCTCACCTACGACTATGTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTC
TTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGG
ACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTGGTGGAGCCTGCCGAGGAAGCCGCCCC
TGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTC
CTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTG
AGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCC
AGAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACC
ATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTG
CCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAGAGATCAAACTTGGGAA
GAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAG
ATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAG
ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAG
CAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCC
GTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGTCCACAGCCCAAAGCTG
CCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTC
CGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAAAGGAGCCAGTTAG

Translation (769 aa):
MNKVSVNGEQNSASPDKVPEEQGPLTNGEPSQHSSAPQKSLPDLPPPKMIPERKQPTVPKIESPEGYYEE
AEPFDRSINEDGEAVSSSYESYDEDENSKGKAAPYQWPSPEASIELMRDARICAFLWRKKWLGQWAKQLC
VIRDTRLLCYKSSKDHSPQLDVNLRGSSVVHKEKQVRKKGHKLKITPMNADVIVLGLQSKDQAEQWLRVI
QEVSGLPSEGASEGNQYTPDAQRLNCQKPDIAEKYLSAAEYGITINGHPEIPETKDVKKKCSAGLKLSNL
MNLGRKKSTSLEPPERSLETSSYLNVLVNSQWKSRWCFVRDSHLHFYQDRNRSKVAQQPLSLVGCDVLPD
PSPDHLYSFRILHNGEELAKLEAKSSEEMGHWLGLLLSESGSKTDPEELTYDYVDAERVSCIVSAAKTSL
LLMQRKFSEPNTYIDGLPSRDCQDDLYDDVEVSELIAVVEPAEEAAPAVDANSGSEPDRVYLDLTPVKSF
LHSSSEAQAQASLPAVPHQDDVAETLTVDPKPGTTPEEPHTESPGDPEVQQRQPEVQESSEPIEPTPRIT
MVKLQAEQQRISFPANCPDTMASAPIAASPPVKEKLRVTSAEIKLGKNRTEAEVKRYTEEKERLERSKEE
IRGHLAQLRREKRELKETLLRCTDKGVLAKLEQTLKKIDEECRMEESRRVDLELSIMEVKDNLKKAEAGP
VTLGTTVDTTHLDNMSPRPQPKAATPNPPPDSTPVNSASVLKNRPLSVMVTGKGTVLQKAKEWEKKGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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