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Report for CCDS29986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29986.1 Public Mus musculus X Wdr13 23 108 98 CCDS HistoryNCBI Gene:73447Re-query CCDS DB by CCDS ID:29986.1Re-query CCDS DB by GeneID:73447See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033506.12 ENSMUSP00000033506.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033506.12Link to Ensembl Protein Viewer:ENSMUSP00000033506.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033506Re-query CCDS DB by Protein ID:ENSMUSP00000033506
Original member Current member EBI ENSMUST00000115623.7 ENSMUSP00000111286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115623.7Link to Ensembl Protein Viewer:ENSMUSP00000111286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115623Re-query CCDS DB by Protein ID:ENSMUSP00000111286
Original member Current member NCBI NM_026137.5 NP_080413.2 Accepted alive Link to Nucleotide Sequence:NM_026137.5Link to Protein Sequence:NP_080413.2Re-query CCDS DB by Nucleotide ID:NM_026137Re-query CCDS DB by Protein ID:NP_080413Link to BLAST:NP_080413.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080413.2 485 Q91V09 485 100% 0 0

Chromosomal Locations for CCDS 29986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8125545 8125729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8126081 8126199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8127811 8127952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8128034 8128214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8128969 8129276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8130003 8130133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8130256 8130365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8131385 8131625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8132287 8132327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCCGCGGTGTGGCAGCAAGTATTAGCAGTGGACGCGAGGTACAACGCCTACCGTACACCAACGTTTC
CACAGTTTCGGACCCAGTATATCCGCCGGCGCAGCCAGCTGCTTCGGGAGAATGCCAAAGCTGGTCACCC
CCCAGCATTGCGTCGGCAGTACCTGAGGCTACGGGGCCAGCTATTGGGCCAACGGTACGGGCCACTCTCA
GAACCAGGCAGTGCTCGTGCCTATAGCAACAGCATTGTCCGCAGCAGCCGAACAACCCTTGATCGAATGG
AGGACTTTGAAGATGACCCCAGAGCCCTGGGGGCTCGAGGACACCGCCGATCTGTCAGCCGAGGTTCCTA
CCAGCTGCAGGCACAAATGAACCGTGCAGTCTATGAGGACAGGCCTCCTGGCAGTGTGGTACCCACGTCG
GTGGCAGAGGCAAGTCGGGCCATGGCCGGGGACACGTCGCTGAGTGAGAACTATGCCTTTGCAGGCATGT
ACCATGTTTTTGACCAACACGTGGATGAGGCAGTCCCAAGGGTGCGCTTCGCCAATGACGACCGGCACCG
CCTGGCCTGCTGCTCCCTGGACGGCAGCATCTCCCTGTGCCAGCTGGTGCCTGCCCCACCCACTGTGCTC
CATGTGCTACGGGGCCATACACGTGGCGTCTCGGACTTCGCCTGGTCCCTCTCCAATGACATCCTTGTGT
CCACCTCCCTCGATGCCACCATGCGCATCTGGGCCTCCGAGGACGGCCGCTGCATCCGTGAGATCCCTGA
CCCTGATGGCGCCGAATTGCTCTGCTGCACCTTCCAGCCAGTCAACAACAACCTCACTGTGGTGGGGAAC
GCCAAGCACAACGTGCATGTCATGAACATCTCCACAGGCAAGAAAGTGAAGGGTGGCTCCAGCAAGCTCA
CCGGCCGCGTCCTCGCCCTGTCCTTTGATGCCCCTGGTCGGCTGCTCTGGGCAGGCGATGACCGCGGCAG
TGTCTTCTCCTTTCTCTTTGACATGGCCACAGGAAAGCTGACCAAAGCCAAGCGACTAGTAGTGCATGAA
GGCAGCCCTGTAACCAGCATTTCTGCCCGGTCCTGGGTCAGCCGTGAAGCACGGGACCCCTCTCTGCTCA
TCAATGCCTGCCTCAACAAGCTGCTACTCTACAGAGTGGTGGACAACGAAGGGGCGCTACAGCTGAAGAG
AAGCTTCCCCATTGAACAGAGTTCCCACCCTGTACGCAGTATCTTCTGCCCCCTCATGTCCTTCCGCCAG
GGGGCCTGTGTGGTGACAGGCAGTGAAGATATGTGCGTTCACTTCTTTGACGTGGAGCGGGCAGCCAAGG
CTGCTGTTAACAAGCTGCAGGGCCACAGCGCGCCCGTGCTTGACGTCAGCTTCAACTGTGACGAGAGTCT
GCTGGCCTCCAGTGATGCCAGTGGCATGGTCATCGTCTGGAGACGAGAGCAAAAGTAG

Translation (485 aa):
MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLS
EPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTS
VAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVL
HVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGN
AKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHE
GSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGALQLKRSFPIEQSSHPVRSIFCPLMSFRQ
GACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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