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Report for CCDS29999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29999.1 Public Mus musculus X Ssxb3 23 108 98 CCDS HistoryNCBI Gene:278174Re-query CCDS DB by CCDS ID:29999.1Re-query CCDS DB by GeneID:278174See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089374.10 ENSMUSP00000086792.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089374.10Link to Ensembl Protein Viewer:ENSMUSP00000086792.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089374Re-query CCDS DB by Protein ID:ENSMUSP00000086792
Original member Current member EBI ENSMUST00000089379.4 ENSMUSP00000086797.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089379.4Link to Ensembl Protein Viewer:ENSMUSP00000086797.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089379Re-query CCDS DB by Protein ID:ENSMUSP00000086797
Original member Current member NCBI NM_198898.3 NP_942601.1 Accepted alive Link to Nucleotide Sequence:NM_198898.3Link to Protein Sequence:NP_942601.1Re-query CCDS DB by Nucleotide ID:NM_198898Re-query CCDS DB by Protein ID:NP_942601Link to BLAST:NP_942601.1

Chromosomal Locations for CCDS 29999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8583993 8584105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8586961 8587036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8587650 8587699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8588176 8588265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8588565 8588679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8589132 8589200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGAAACAGTGAGTTCCTGTGAAAAGATCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGG
CCTTCCAGGATATTTCTACATACTTCTCTGATGAAGAGTGGGGAAAGCTGACTCAATGGCAGAAAAGTGC
CTACATGTACATGAAAAGAAACTACATCAGAATGACTGACCTAGGGGTCACCGTGAACCAACCAGTTTTC
ATGCGTGGCAAGGAGCAGGAAAAGCAATCCCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGATGAAT
GCTTTGAAGGATCTTTTGATGTGACACCGAGAAAACGAATGAAGCTGACGTCAGTGACAATAAGTATTCA
TAATGTAGAAGGAAGCCTTGCCTCTGGAAAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTC
AATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATATTCAGAGATTAGTGATCCTGAAG
AGGAAGAAGATGATGATTACTAA

Translation (170 aa):
METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYMYMKRNYIRMTDLGVTVNQPVF
MRGKEQEKQSLVEGIEVHDSDDECFEGSFDVTPRKRMKLTSVTISIHNVEGSLASGKNDSNLAETDGIQV
NVWSHRLRERKYRVIYSEISDPEEEEDDDY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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