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Report for CCDS30043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30043.1 Public Mus musculus X Rgn 23 108 98 CCDS HistoryNCBI Gene:19733Re-query CCDS DB by CCDS ID:30043.1Re-query CCDS DB by GeneID:19733See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023832.6 ENSMUSP00000023832.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023832.6Link to Ensembl Protein Viewer:ENSMUSP00000023832.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023832Re-query CCDS DB by Protein ID:ENSMUSP00000023832
Original member NCBI NM_009060.2 NP_033086.1 Updated not alive Link to Nucleotide Sequence:NM_009060.2Link to Protein Sequence:NP_033086.1Re-query CCDS DB by Nucleotide ID:NM_009060Re-query CCDS DB by Protein ID:NP_033086
Current member NCBI NM_009060.3 NP_033086.1 Accepted alive Link to Nucleotide Sequence:NM_009060.3Link to Protein Sequence:NP_033086.1Re-query CCDS DB by Nucleotide ID:NM_009060Re-query CCDS DB by Protein ID:NP_033086Link to BLAST:NP_033086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033086.1 299 Q64374 299 100% 0 0

Chromosomal Locations for CCDS 30043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20550379 20550541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20552320 20552502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20557512 20557727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20559355 20559486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20559977 20560131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20561435 20561485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGTCTTCCATCAAAGTTGAATGTGTTTTACGGGAGAACTACAGGTGTGGGGAGTCTCCTGTATGGGAGG
AAGCGTCACAGTCGCTACTGTTTGTAGATATCCCTTCAAAGATTATTTGTCGATGGGATACGGTCAGCAA
TCAAGTGCAGCGAGTTGCTGTGGATGCCCCAGTCAGTTCAGTGGCACTTCGACAGTTGGGAGGCTATGTT
GCCACCATTGGAACCAAGTTCTGTGCTTTGAACTGGGAAAATCAATCAGTATTTGTCCTAGCCATGGTGG
ATGAAGATAAGAAAAATAATCGATTCAATGATGGGAAGGTGGATCCTGCTGGGAGATACTTTGCTGGTAC
CATGGCTGAGGAAACGGCCCCAGCTGTTCTTGAGCGGCACCAAGGGTCCTTGTACTCCCTCTTTCCTGAT
CACAGTGTGAAGAAATACTTTGACCAAGTGGATATCTCCAATGGTTTGGATTGGTCCCTGGACCATAAAA
TCTTCTACTACATTGACAGCCTGTCCTACACTGTGGATGCCTTTGACTATGACCTACAAACAGGACAGAT
TTCCAACCGCAGAATTGTTTACAAGATGGAAAAAGATGAACAAATCCCAGATGGAATGTGCATTGATGCT
GAGGGAAAGCTATGGGTGGCCTGTTACAATGGAGGAAGAGTAATTCGCCTGGATCCTGAGACAGGGAAAA
GACTGCAAACTGTGAAGTTGCCTGTTGATAAAACAACTTCATGCTGCTTTGGAGGGAAAGATTACTCTGA
AATGTATGTGACCTGTGCCAGGGATGGGTTGAATGCTGAAGGCCTTTTGAGGCAGCCTGATGCTGGTAAC
ATTTTCAAGATAACAGGTCTCGGAGTCAAAGGAATTGCCCCATATTCCTATGCAGGGTGA

Translation (299 aa):
MSSIKVECVLRENYRCGESPVWEEASQSLLFVDIPSKIICRWDTVSNQVQRVAVDAPVSSVALRQLGGYV
ATIGTKFCALNWENQSVFVLAMVDEDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGSLYSLFPD
HSVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYTVDAFDYDLQTGQISNRRIVYKMEKDEQIPDGMCIDA
EGKLWVACYNGGRVIRLDPETGKRLQTVKLPVDKTTSCCFGGKDYSEMYVTCARDGLNAEGLLRQPDAGN
IFKITGLGVKGIAPYSYAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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