NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30045.1 Public Mus musculus X Cdk16 23 108 98 CCDS HistoryNCBI Gene:18555Re-query CCDS DB by CCDS ID:30045.1Re-query CCDS DB by GeneID:18555See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033380.6 ENSMUSP00000033380.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033380.6Link to Ensembl Protein Viewer:ENSMUSP00000033380.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033380Re-query CCDS DB by Protein ID:ENSMUSP00000033380
Original member NCBI NM_011049.5 NP_035179.1 Updated not alive Link to Nucleotide Sequence:NM_011049.5Link to Protein Sequence:NP_035179.1Re-query CCDS DB by Nucleotide ID:NM_011049Re-query CCDS DB by Protein ID:NP_035179
Current member NCBI NM_011049.6 NP_035179.1 Accepted alive Link to Nucleotide Sequence:NM_011049.6Link to Protein Sequence:NP_035179.1Re-query CCDS DB by Nucleotide ID:NM_011049Re-query CCDS DB by Protein ID:NP_035179Link to BLAST:NP_035179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035179.1 496 Q04735-1 496 100% 0 0

Chromosomal Locations for CCDS 30045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20693330 20693531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20694038 20694171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20694271 20694396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20694489 20694545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20694632 20694746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20695510 20695604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20695699 20695761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696018 20696141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696347 20696467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696548 20696645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696731 20696836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696922 20696964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20697120 20697210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20698451 20698528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20698609 20698646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCCGAGGGGGCCGAGGCATAGATAAGA
CCAATGGTGTCCCTGAGCAGATAGGCCTGGATGAGAGTGGTGGCGGTGGTGGCAGTGACCTTGGAGAAGC
TCCCACCCGTATTGCCCCTGGGGAGCTTCGCTCTGTTCGGGGCCCACTCAGCTCTGCACCAGAGATTGTG
CACGAGGACATGAAGATGGGATCTGATGGGGAGAGTGACCAGGCTTCAGCCACATCCTCAGATGAGGTGC
AGTCTCCAGTGAGAGTGCGCATGCGCAACCACCCCCCACGCAAGATCTCCACTGAGGACATCAACAAACG
CCTGTCACTACCAGCTGACATACGGCTGCCTGAGGGCTACCTTGAGAAGCTGACCCTCAATAGCCCCATC
TTTGATAAGCCTCTTAGCCGGCGCCTCCGCCGAGTCAGTTTGTCTGAGATTGGCTTTGGAAAACTGGAGA
CCTACATCAAGCTAGACAAGCTGGGTGAGGGTACCTATGCCACTGTCTACAAAGGCAAAAGCAAGCTCAC
AGACAACCTTGTAGCACTTAAGGAGATCAGACTGGAACACGAAGAAGGGGCACCCTGTACTGCTATCCGG
GAAGTATCCCTGCTTAAGGACCTCAAGCATGCCAACATCGTCACACTACATGACATTATCCACACAGAGA
AGTCCCTCACACTTGTCTTTGAATACTTGGACAAGGACCTGAAGCAGTACCTGGATGACTGTGGAAATGT
CATCAACATGCACAATGTGAAACTGTTCCTGTTCCAGTTGCTCCGTGGCCTGGCCTACTGCCACAGGCAG
AAGGTGCTACACCGAGACCTCAAGCCCCAGAACCTACTCATCAACGAGAGGGGAGAGCTCAAACTGGCAG
ATTTTGGCCTGGCTCGTGCCAAGTCAATTCCTACTAAAACATACTCCAACGAAGTGGTGACACTGTGGTA
CCGGCCCCCTGACATCCTACTTGGGTCCACAGACTACTCTACCCAAATTGACATGTGGGGTGTAGGCTGC
ATCTTCTATGAGATGGCCACCGGCCGGCCCCTCTTCCCAGGCTCCACAGTGGAAGAACAGCTGCACTTCA
TCTTCCGCATTTTGGGAACCCCAACTGAGGAGACATGGCCAGGTATCCTGTCCAATGAGGAGTTTAGAAC
ATACAACTACCCCAAGTACCGAGCCGAGGCCCTTCTGAGCCATGCACCCCGACTTGATAGCGATGGAGCT
GACCTCCTCACCAAGCTGCTGCAGTTTGAGGGTCGCAATCGGATCTCTGCTGAGGATGCCAGGAAACATC
CATTCTTTCTCAGCTTGGGGGAGCGGATCCACAAACTTCCTGACACTACTTCCATATTTGCACTAAAGGA
GGTACAGCTACAAAAGGAGGCCAACATTCGGTCCACTTCTATGCCTGACTCAGGCAGGCCAGCTTTCCGT
GTGGTGGATACCGAGTTCTAA

Translation (496 aa):
MDRMKKIKRQLSMTLRGGRGIDKTNGVPEQIGLDESGGGGGSDLGEAPTRIAPGELRSVRGPLSSAPEIV
HEDMKMGSDGESDQASATSSDEVQSPVRVRMRNHPPRKISTEDINKRLSLPADIRLPEGYLEKLTLNSPI
FDKPLSRRLRRVSLSEIGFGKLETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIR
EVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLAYCHRQ
KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGC
IFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFRTYNYPKYRAEALLSHAPRLDSDGA
DLLTKLLQFEGRNRISAEDARKHPFFLSLGERIHKLPDTTSIFALKEVQLQKEANIRSTSMPDSGRPAFR
VVDTEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH