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Report for CCDS30047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30047.1 Public Mus musculus X Cfp 23 108 98 CCDS HistoryNCBI Gene:18636Re-query CCDS DB by CCDS ID:30047.1Re-query CCDS DB by GeneID:18636See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001156.7 ENSMUSP00000001156.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001156.7Link to Ensembl Protein Viewer:ENSMUSP00000001156.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001156Re-query CCDS DB by Protein ID:ENSMUSP00000001156
Original member Current member NCBI NM_008823.4 NP_032849.2 Accepted alive Link to Nucleotide Sequence:NM_008823.4Link to Protein Sequence:NP_032849.2Re-query CCDS DB by Nucleotide ID:NM_008823Re-query CCDS DB by Protein ID:NP_032849Link to BLAST:NP_032849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032849.2 464 P11680 464 100% 0 0

Chromosomal Locations for CCDS 30047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20925594 20925759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20927281 20927392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20927535 20927723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20927953 20928126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20928328 20928519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20928643 20928813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20929596 20929771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20931152 20931302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20931391 20931454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGCCTGCTGAAATGCAAGCCCCTCAGTGGCTCCTGCTGCTACTGGTTATCCTGCCAGCCACAGGCTCAG
ACCCTGTGCTCTGCTTCACCCAGTATGAGGAGTCCTCTGGCAGGTGCAAAGGCCTACTTGGGAGAGACAT
CAGGGTAGAAGACTGCTGTCTCAACGCTGCCTATGCCTTCCAGGAGCATGATGGTGGCCTCTGTCAGGCA
TGCAGGTCTCCACAATGGTCAGCATGGTCCTTATGGGGGCCCTGCTCAGTTACATGTTCTGAGGGGTCCC
AGCTGCGACACAGGCGCTGTGTGGGCAGAGGTGGTCAGTGCTCTGAGAATGTGGCTCCTGGAACTCTTGA
GTGGCAGCTACAGGCCTGTGAGGACCAGCCATGCTGTCCAGAGATGGGTGGCTGGTCTGAGTGGGGACCC
TGGGGGCCTTGCTCTGTCACATGCTCCAAAGGAACCCAGATCCGTCAACGAGTATGTGATAATCCTGCTC
CTAAGTGTGGGGGCCACTGCCCAGGAGAGGCCCAGCAATCACAGGCCTGTGACACCCAGAAGACCTGCCC
CACACATGGGGCCTGGGCATCCTGGGGCCCCTGGAGCCCCTGCTCAGGATCCTGCCTTGGTGGTGCTCAA
GAACCTAAGGAGACACGAAGCCGCTCATGTTCTGCACCAGCACCTTCACACCAGCCCCCTGGGAAACCCT
GCTCAGGACCAGCCTATGAGCATAAGGCCTGCAGTGGCCTACCACCTTGCCCAGTGGCTGGTGGCTGGGG
GCCATGGAGCCCTTTGAGCCCCTGCTCTGTGACTTGTGGCCTGGGCCAGACCCTAGAGCAACGGACATGT
GATCACCCTGCACCCCGTCATGGGGGCCCCTTTTGTGCTGGTGATGCCACTCGGAACCAAATGTGTAACA
AAGCCGTACCTTGCCCTGTAAACGGGGAGTGGGAGGCCTGGGGAAAATGGAGTGACTGCAGCCGGCTGAG
AATGTCCATCAACTGTGAAGGAACCCCAGGCCAGCAGTCACGTTCAAGGAGCTGTGGCGGCCGCAAATTT
AATGGGAAGCCATGTGCTGGAAAACTCCAGGATATTCGACACTGCTATAACATCCATAACTGTATCATGA
AAGGTTCATGGTCACAGTGGAGTACCTGGAGTCTGTGCACACCACCATGTAGTCCCAACGCCACCCGTGT
CCGCCAGCGCCTCTGCACACCTTTGCTCCCCAAGTACCCGCCTACAGTTTCAATGGTTGAAGGTCAGGGT
GAGAAGAATGTTACCTTCTGGGGGACTCCACGGCCACTGTGTGAAGCGCTACAGGGGCAGAAGCTGGTGG
TGGAAGAGAAACGGTCATGTCTACATGTGCCTGTCTGCAAAGACCCAGAAGAGAAGAAACCCTAA

Translation (464 aa):
MPAEMQAPQWLLLLLVILPATGSDPVLCFTQYEESSGRCKGLLGRDIRVEDCCLNAAYAFQEHDGGLCQA
CRSPQWSAWSLWGPCSVTCSEGSQLRHRRCVGRGGQCSENVAPGTLEWQLQACEDQPCCPEMGGWSEWGP
WGPCSVTCSKGTQIRQRVCDNPAPKCGGHCPGEAQQSQACDTQKTCPTHGAWASWGPWSPCSGSCLGGAQ
EPKETRSRSCSAPAPSHQPPGKPCSGPAYEHKACSGLPPCPVAGGWGPWSPLSPCSVTCGLGQTLEQRTC
DHPAPRHGGPFCAGDATRNQMCNKAVPCPVNGEWEAWGKWSDCSRLRMSINCEGTPGQQSRSRSCGGRKF
NGKPCAGKLQDIRHCYNIHNCIMKGSWSQWSTWSLCTPPCSPNATRVRQRLCTPLLPKYPPTVSMVEGQG
EKNVTFWGTPRPLCEALQGQKLVVEEKRSCLHVPVCKDPEEKKP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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