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Report for CCDS30048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30048.1 Public Mus musculus X Elk1 23 108 98 CCDS HistoryNCBI Gene:13712Re-query CCDS DB by CCDS ID:30048.1Re-query CCDS DB by GeneID:13712See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30048.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009550.13 ENSMUSP00000009550.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009550.13Link to Ensembl Protein Viewer:ENSMUSP00000009550.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000009550Re-query CCDS DB by Protein ID:ENSMUSP00000009550
Original member Current member NCBI NM_007922.5 NP_031948.4 Accepted alive Link to Nucleotide Sequence:NM_007922.5Link to Protein Sequence:NP_031948.4Re-query CCDS DB by Nucleotide ID:NM_007922Re-query CCDS DB by Protein ID:NP_031948Link to BLAST:NP_031948.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031948.4 429 P41969 429 100% 0 0

Chromosomal Locations for CCDS 30048.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20935450 20935548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20935631 20935732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20936232 20936663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20937117 20937563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20941554 20941763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGACCCATCTGTGACGCTGTGGCAGTTTCTGCTGCAGCTTCTGAGAGAACAAGGTAATGGCCACATCA
TCTCCTGGACCTCACGGGATGGTGGTGAGTTCAAGTTGGTGGATGCAGAGGAGGTGGCCCGGCTATGGGG
ACTGCGCAAGAACAAGACCAACATGAATTACGACAAGCTTAGCCGGGCCTTGCGGTACTACTATGATAAG
AATATCATCCGCAAGGTGAGCGGCCAGAAGTTTGTCTACAAGTTTGTGTCCTACCCAGAGGTTGCAGGGT
GCTCCACTGAAGACTGCCCACCCCAGCCTGAGGTGTCTGTAACCTCGGCCATAGCCATGGCCCCTGCTAC
TGTCCATGCAGGCCCAGGGGACACTGCCACTGGAAAGCCAGGAACACCAAAGGGTGCAGGAATGACAGGC
CAAGGTGGCTTAGCACGAAGCAGCCGGAATGAATACATGCGCTCGGGCCTCTATTCTACCTTCACAATAC
AATCCCTGCAGCCACAGCCACAGCCACCCATTCCTCCTCGGCCTGCCTCAGTGCTTCCCAACACTACCCC
TGCAGGAGTACCAGCACCCGCCTCAGGGAGCAGGAGCACCAGTCCAAACCCCTTAGAAGCCTGTTTGGAA
GCAGAAGAGGCTGGTCTGCCCCTGCAGGTTATCCTAACCCCACCAGAGGCCCCAAACCAGAAATCCGAAG
AGTTGAGTCTGGACCCAAGTTTTGGCCATCCACAGCCCCCAGAAGTCAAAGTGGAGGGGCCTAAGGAAGA
ATTGGAAGCTGCAAGGGCTGGAGGCTTCAGTTCAGAAGCTGTCAAAGCTGAACCAGAAGTCTCAGCCTCA
GAAGGCCTGCTGGCTCGGCTCCCAGCCATCCTAACAGAGAACACAGCCCAGGTGTGTGGCCTCTCCACTT
CCACCACTGAGATCACCCAACCGCAGAAGGGCCGAAAGCCTCGGGACCTGGAACTTCCACTTAGCCCAAG
CCTGCTGGGTGGCCAGGGACCTGAACGGACTCCAGGATCAGGAACAAGCTCTGGTCTTCAGGCACCGGGG
CCAGCGCTAACGCCATCCCTGCTCCCCACACATACCTTGACCCCGGTGCTGCTGACACCCAGCTCGCTGC
CCCCTAGCATCCATTTCTGGAGCACTCTGAGTCCAATTGCACCCCGTAGTCCAGCCAAGCTCTCCTTCCA
GTTTCCGTCCAGTGGCAGCGCACAGGTGCACATCCCTTCCATCAGTGTGGATGGCCTCTCGACCCCCGTG
GTGCTCTCCCCAGGGCCCCAGAAGCCATGA

Translation (429 aa):
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDK
NIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSAIAMAPATVHAGPGDTATGKPGTPKGAGMTG
QGGLARSSRNEYMRSGLYSTFTIQSLQPQPQPPIPPRPASVLPNTTPAGVPAPASGSRSTSPNPLEACLE
AEEAGLPLQVILTPPEAPNQKSEELSLDPSFGHPQPPEVKVEGPKEELEAARAGGFSSEAVKAEPEVSAS
EGLLARLPAILTENTAQVCGLSTSTTEITQPQKGRKPRDLELPLSPSLLGGQGPERTPGSGTSSGLQAPG
PALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPV
VLSPGPQKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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