NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30057.1 Public Mus musculus X Il13ra1 23 108 98 CCDS HistoryNCBI Gene:16164Re-query CCDS DB by CCDS ID:30057.1Re-query CCDS DB by GeneID:16164See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033418.7 ENSMUSP00000033418.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033418.7Link to Ensembl Protein Viewer:ENSMUSP00000033418.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033418Re-query CCDS DB by Protein ID:ENSMUSP00000033418
Original member Current member NCBI NM_133990.5 NP_598751.3 Accepted alive Link to Nucleotide Sequence:NM_133990.5Link to Protein Sequence:NP_598751.3Re-query CCDS DB by Nucleotide ID:NM_133990Re-query CCDS DB by Protein ID:NP_598751Link to BLAST:NP_598751.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598751.3 424 O09030 424 100% 0 0

Chromosomal Locations for CCDS 30057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 36112194 36112275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36126645 36126784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36130604 36130742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36132964 36133084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36141213 36141397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36144011 36144162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36148650 36148697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36148979 36149111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36152018 36152114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36155543 36155627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36168814 36168906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCGCGGCCAGCGCTGCTGGGCGAGCTGTTGGTGCTGCTACTGTGGACCGCCACCGTGGGCCAAGTTG
CCGCGGCCACAGAAGTTCAGCCACCTGTGACGAATTTGAGCGTCTCTGTCGAAAATCTCTGCACGATAAT
ATGGACGTGGAGTCCTCCTGAAGGAGCCAGTCCAAATTGCACTCTCAGATATTTTAGTCACTTTGATGAC
CAACAGGATAAGAAAATTGCTCCAGAAACTCATCGTAAAGAGGAATTACCCCTGGATGAGAAAATCTGTC
TGCAGGTGGGCTCTCAGTGTAGTGCCAATGAAAGTGAGAAGCCTAGCCCTTTGGTGAAAAAGTGCATCTC
ACCCCCTGAAGGTGATCCTGAGTCCGCTGTGACTGAGCTCAAGTGCATTTGGCATAACCTGAGCTATATG
AAGTGTTCCTGGCTCCCTGGAAGGAATACAAGCCCTGACACACACTATACTCTGTACTATTGGTACAGCA
GCCTGGAGAAAAGTCGTCAATGTGAAAACATCTATAGAGAAGGTCAACACATTGCTTGTTCCTTTAAATT
GACTAAAGTGGAACCTAGTTTTGAACATCAGAACGTTCAAATAATGGTCAAGGATAATGCTGGGAAAATT
AGGCCATCCTGCAAAATAGTGTCTTTAACTTCCTATGTGAAACCTGATCCTCCACATATTAAACATCTTC
TCCTCAAAAATGGTGCCTTATTAGTGCAGTGGAAGAATCCACAAAATTTTAGAAGCAGATGCTTAACTTA
TGAAGTGGAGGTCAATAATACTCAAACCGACCGACATAATATTTTAGAGGTTGAAGAGGACAAATGCCAG
AATTCCGAATCTGATAGAAACATGGAGGGTACAAGTTGTTTCCAACTCCCTGGTGTTCTTGCCGACGCTG
TCTACACAGTCAGAGTAAGAGTCAAAACAAACAAGTTATGCTTTGATGACAACAAACTGTGGAGTGATTG
GAGTGAAGCACAGAGTATAGGTAAGGAGCAAAACTCCACCTTCTACACCACCATGTTACTCACCATTCCA
GTCTTTGTCGCAGTGGCAGTCATAATCCTCCTTTTTTACCTGAAAAGGCTTAAGATCATTATATTTCCTC
CAATTCCTGATCCTGGCAAGATTTTTAAAGAAATGTTTGGAGACCAGAATGATGATACCCTGCACTGGAA
GAAGTATGACATCTATGAGAAACAATCCAAAGAAGAAACGGATTCTGTAGTGCTGATAGAAAACCTGAAG
AAAGCAGCTCCTTGA

Translation (424 aa):
MARPALLGELLVLLLWTATVGQVAAATEVQPPVTNLSVSVENLCTIIWTWSPPEGASPNCTLRYFSHFDD
QQDKKIAPETHRKEELPLDEKICLQVGSQCSANESEKPSPLVKKCISPPEGDPESAVTELKCIWHNLSYM
KCSWLPGRNTSPDTHYTLYYWYSSLEKSRQCENIYREGQHIACSFKLTKVEPSFEHQNVQIMVKDNAGKI
RPSCKIVSLTSYVKPDPPHIKHLLLKNGALLVQWKNPQNFRSRCLTYEVEVNNTQTDRHNILEVEEDKCQ
NSESDRNMEGTSCFQLPGVLADAVYTVRVRVKTNKLCFDDNKLWSDWSEAQSIGKEQNSTFYTTMLLTIP
VFVAVAVIILLFYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHWKKYDIYEKQSKEETDSVVLIENLK
KAAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH