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Report for CCDS30107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30107.1 Public Mus musculus X Utp14a 23 108 98 CCDS HistoryNCBI Gene:72554Re-query CCDS DB by CCDS ID:30107.1Re-query CCDS DB by GeneID:72554See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080713.4 ENSMUSP00000079538.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080713.4Link to Ensembl Protein Viewer:ENSMUSP00000079538.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080713Re-query CCDS DB by Protein ID:ENSMUSP00000079538
Original member Current member NCBI NM_028276.1 NP_082552.1 Accepted alive Link to Nucleotide Sequence:NM_028276.1Link to Protein Sequence:NP_082552.1Re-query CCDS DB by Nucleotide ID:NM_028276Re-query CCDS DB by Protein ID:NP_082552Link to BLAST:NP_082552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082552.1 767 Q640M1-1 767 100% 0 0

Chromosomal Locations for CCDS 30107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48256943 48256968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48258340 48258415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48259723 48259793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48260586 48260650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48262895 48263037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48263477 48263632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48272800 48272919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48273022 48273116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48273690 48273813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48273899 48273976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48274801 48275188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48277222 48277619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48278367 48278560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48278668 48278767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48282062 48282331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGAACTCTATCAAAGCTACGAAGGGCCTTCTGGCTTTGAGCCAGCAGGATGATCTAATGGATTTGACAA
GCAACTACCCCTTGAGTGCCAGTGAAGATGAGGGGGACAGTGATGGAGAAAGAAAGCATCAAAAACTTCT
GGAAGCAATTGGTTCCCTTAGTGGAAAAAATAGGTGGAAATTGCCTGAGAGATCTGAGGCTGGTCTAAAA
GTGTCTGAGTTTAATGTTAGTTCTGAAGGATCTGGAGAAAAATTGGCCCTTTCTGATCTGCTTGGACCTC
TTAAACCTTCATCATCATTGGCTGCTGTCAAAAAGCAACTGAGTAGAGTCAAATCGAAGAAGACTCTGGA
ATTACCTCTTCACAAAAGAGAGGTTGAACAGATCCACAGAGAAGTGGCATTCAGTAAAACTTCACAAACC
CTCTCCAAATGGGATTCTGTTGTTCAGAAGAACCGGGAAGCAGAGCAGCTGGTTTTTCCTCTAGAGAAGG
AGCCATCTTCTTTTGCTCCCATGGAACATGTGTTTCGTGAGTGGAAGGCGAGAACTCCACTGGAACAGGA
AGTTTTTAACCTCCTCCATAAGAACAAACAGCCAGTGACAGACCCTTTACTGACTCCTGTGGAAAAGGCC
TCCCTCAAAGCCATGAGCCTGGAAGAGGCTAAGATTCGCAGAGCAGAGCTTCAGAGGGCCCGAGCTCTGC
AGTCCTACTATGAAGCCAGGGCTCGAAGAATGAAGAAAATCAAAAGTAAAAAATACCACAAAATTGTGAA
GAAGGGAAAGGCCAAGAAAGCCCTAAAAGATTTTGAGCAGCTGAGGAAAGTTGACCCAGATGCTGCATTG
GAAGAACTGGAAAAAATGGAAAAAGCCAGAATGATGGAGCGAATGAGCCTTAAGCATCAAAACAGTGGGA
AATGGGCCAAGTCAAAGGCCATTATGGCAAAATATGACCTGGAGGCCCGCCAAGCTATGCAAGAGCAGTT
GGCTAAGAACAAGGAACTGACCCAGAAGCTGCAAGTTGTGTCAGAGAGTGAGGAAGAGGGAGGTGCTGAC
GAGGAAGAAGCCCTCGTTCCTGACATAGTGAATGAGGTACAGAAGACGGCTGATGGACCCAATCCGTGGA
TGCTCAGGAGTTGCAGTCGTGATGCAAAAGAAAATGAGATCCAGGCTGACTCTGAACAGCTGCCTGAGTC
TGCAGCCCATGAGTTTCCTGAAAATGAGGAAAATGACAAACCAGTGGCAGAGGAAGATGAGTTGTTGAAG
GAATTGGAGAAAAGGAGATCCCTTAGGAAAAGATCTGAGCTCAACCAGGCTGCTGAGCCACTGGGTAACC
AAGAAACAAAAGATTCTACCAGCCAGGAGGTATTATCTGAATTGAGGGCATTATCTAAGAAACTCAGTAA
GGAAAACCATCTATCTAAGAAACAAAAAAAGAGTCCAGCAAAGGCTGTTGACCTGGTCTGGGAAGAGGAA
CCTGCCCCAGAGGAAGATGAGCCTCTCTTGCTGCAGAGGCCAGAGAGAATGCGAACTCTGGAGGAACTAG
AAGAGCTAGGTAAAGAGGACAGCCTTCCAAATAAGGAGCGCCCTAGACCTTCAGTAGAAGGGGAGCAGGT
GAGGAGGAACCCACAGAATCACTCCAAGGGGAAGAACAAGAAGGAACAAATGATCAGTCTACAGAACCTC
CTGACTACAAGAACTCCCTCTGTGACGTCACTGGCGCTTCCGACAACAGTAGAGGAGTTGGAAGATGAAG
GGGCAAGAGACCAAAAGCAAATGATAAAGGAAGCTTTTGCTGGGGATGATGTCATCAAAGAGTTCCTAAA
AGAGAAGAGAGAAGCTATCCAGGCCAATAAGCCAAAGGCTGTGGATCTGACCTTACCTGGCTGGGGAGAG
TGGGGCGGGATGAACCTGAAGCCCAGCGCCAGGAAAAGACGCCGGTTTCTTATTAAAGCCCCTGAGGGGC
CTCCAAGAAAAGATAAGAATTTGCCCAATGTGATTATCAGTGAGAAGCGAAACATCCATGCGGCAGCTCA
CCAGGTGCGGGTCCTTCCATATCCGTTCACCCACCATCAGCAATTTGAAAGGACCATCCAGAATCCTATA
GGATCCACATGGAACACCCAGAGAGCATTCCAAAAGCTGACTGCTCCCAAGGTCGTTACCAAGCCAGGCC
ATATTATCAAACCCATAACAGCAGAGGATGTGGATTGCCGATCTTCCCCAAGGTCTGACGTGCCTGTCAT
GCAGAGCAATCCAAAACAACACTCCAAACATCAAAAACAACGGAAGAAAAGCTCTATAGGTTGA

Translation (767 aa):
MNSIKATKGLLALSQQDDLMDLTSNYPLSASEDEGDSDGERKHQKLLEAIGSLSGKNRWKLPERSEAGLK
VSEFNVSSEGSGEKLALSDLLGPLKPSSSLAAVKKQLSRVKSKKTLELPLHKREVEQIHREVAFSKTSQT
LSKWDSVVQKNREAEQLVFPLEKEPSSFAPMEHVFREWKARTPLEQEVFNLLHKNKQPVTDPLLTPVEKA
SLKAMSLEEAKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVKKGKAKKALKDFEQLRKVDPDAAL
EELEKMEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVVSESEEEGGAD
EEEALVPDIVNEVQKTADGPNPWMLRSCSRDAKENEIQADSEQLPESAAHEFPENEENDKPVAEEDELLK
ELEKRRSLRKRSELNQAAEPLGNQETKDSTSQEVLSELRALSKKLSKENHLSKKQKKSPAKAVDLVWEEE
PAPEEDEPLLLQRPERMRTLEELEELGKEDSLPNKERPRPSVEGEQVRRNPQNHSKGKNKKEQMISLQNL
LTTRTPSVTSLALPTTVEELEDEGARDQKQMIKEAFAGDDVIKEFLKEKREAIQANKPKAVDLTLPGWGE
WGGMNLKPSARKRRRFLIKAPEGPPRKDKNLPNVIISEKRNIHAAAHQVRVLPYPFTHHQQFERTIQNPI
GSTWNTQRAFQKLTAPKVVTKPGHIIKPITAEDVDCRSSPRSDVPVMQSNPKQHSKHQKQRKKSSIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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