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Report for CCDS30108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30108.1 Public Mus musculus X Elf4 23 108 98 CCDS HistoryNCBI Gene:56501Re-query CCDS DB by CCDS ID:30108.1Re-query CCDS DB by GeneID:56501See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033429.8 ENSMUSP00000033429.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033429.8Link to Ensembl Protein Viewer:ENSMUSP00000033429.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033429Re-query CCDS DB by Protein ID:ENSMUSP00000033429
Original member Current member EBI ENSMUST00000114958.7 ENSMUSP00000110608.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114958.7Link to Ensembl Protein Viewer:ENSMUSP00000110608.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114958Re-query CCDS DB by Protein ID:ENSMUSP00000110608
Original member Current member NCBI NM_019680.2 NP_062654.2 Accepted alive Link to Nucleotide Sequence:NM_019680.2Link to Protein Sequence:NP_062654.2Re-query CCDS DB by Nucleotide ID:NM_019680Re-query CCDS DB by Protein ID:NP_062654Link to BLAST:NP_062654.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062654.2 655 Q9Z2U4 655 100% 0 0

Chromosomal Locations for CCDS 30108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48414663 48415446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48416647 48417024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48417871 48418063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48418155 48418238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48419008 48419199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48420276 48420368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48420704 48420875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48424078 48424149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGCTATTGCTCTGCAGCCCAGTGATCTGGTCTTCGAGTTTGCAAGCAACGGGATGGATGATATCCACC
AG
CTGGAAGACCCTTCAGTGTTCCCAGCCGTGATCGTGGAACAGGTCCCCTATCCTGAATTAGTGCATCT
G
TGCTCAGGACTGGATCTGGATGAGGTCCACAATGGCATCATAAGGGACAGGACCTTGTGCATGACACAG
GAT
CAGATTTTAGAAGGCAGTATTTTGCTGACAGATGATGATGTATCCACCTCAAATAACGTGTCATCCA
CT
GAAGTCCTATTCAATGTGGCAACTCCCAGTGATGTCCTGGATGAGAAGCAGATCTTCAGCTCACCGGA
A
GTGCTTTCAGACTCCAACTCTGTTCAGGCCATCAATCTACCCAACTTCCTGCTCTCTACCCCTGAACCT
GAT
GACCTGAAGAAGACAAGTGATGCTGGTGACCAGAAGGAGCATTCTGAGGAGGAGAAGGTCTCCAGAG
AG
GAAAATCTTAGGAAGATGGGGAAGGCACGGAAGAGAAACCGAAAGACCAAGAACAACCGAAGTACCTC
A
CCTGTCACTGACCCTAGCATGCCTATACGGAAGAAATCCAAAGATGGCAAAGGCAGCACCATTTATCTG
TGG
GAGTTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTGCCCCAAGTACATTAAGTGGACGCAGAGAG
AG
AAGGGCATCTTCAAGTTGGTGGACTCCAAGGCTGTGTCCAAGCTGTGGGGCAAGCAGAAAAACAAACC
T
GACATGAACTACGAGACCATGGGGCGAGCCCTGAGATATTATTATCAAAGAGGAATCCTGGCCAAAGTG
GAA
GGGCAGAGGCTGGTATACCAGTTCAAGGAGATGCCTAAGGACTTGGTGGTGATTGATGATGAAGAAG
AG
AGCCCTGAGACACCAGAAGACTCTTCCCAGGCCTCGACTTCCTCCACACCCTCGACCAGTACCATCCG
G
AGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCA
AAA
GTCCAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAGTTAGGATTGTCTGTGGATGAGGAGGTTC
CC
ACCACCTCCACCATGCTTGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTC
T
CCAGCACCCAGTAACATCCACCTAGGAGTAGCCCCTGTGGGGCCTGGCTCCACTGTCACCCTGCAGACC
ATC
CCGCTGACTACGGTGCTGACCAATGGGCCTCCTGCCAGTACTACTGCTCCAACTCAACTCGTTCTTC
AG
AGTGTCCCGCAGGTGTCAACATTCAAGGACACCTTCACTTTGCAGACCTCCTTCCCCCTGAACACCAA
T
TTGCAAGAGAACCAGGTGGCAACCCAAGGGGCCCCACTGATCCTCAGTGGTCTCCCCCAACTTCTGGCT
GGG
GCCAACCCTCAGAGCAACCCAGCTCCATCCCAGGTCATAGGTGCTGGGTCAGCAGGGCCTAGCTCTC
AG
CCCCCTGGGACTGTGATTGCTGCCTTTATCAGGACTTCCAGTGGCACATCAGTGCCTGTGGTAAAGGA
G
GGGCCCTTGAGGTCCTCTTCATATGTGCAGGGTGTGGTTACTGGGGCACCCGTGGAGGGGCTGTTGGTT
CCT
GAAGAGACCCTGAGAGAGCTCCTGAGAGATCAGGGTCATCTTCAGCCACTTCCGAGTCAGGTGCTCT
CA
AGGGGTTCCCATAACCTGAGCCTTGTGGGGAACCAGACTCTCTCTCCCCCTAGCCACCCCACTGTTGG
G
CTAACCCCAGTGGCTGAGCTCGAGCTCTCGTCAGGCTCAGGGCCCCTGTTCGTAACTGAGCCTAGTGTG
ACC
AGATCCCCAACCCAGGCCCCTTTCTCCCCATTCAATCCCACTTCCCTCATTAAGATGGAACCCCAAG
AT
ATATAA


Translation (655 aa):
MAIALQPSDLVFEFASNGMDDIHQLEDPSVFPAVIVEQVPYPELVHLCSGLDLDEVHNGIIRDRTLCMTQ
D
QILEGSILLT
DDDVSTSNNVSSTEVLFNVATPSDVLDEKQIFSSPEVLSDSNSVQAINLPNFLLSTPEP
D
DLKKTSDAGDQKEHSEEEKVSREENLRKMGKARKR
NRKTKNNRSTSPVTDPSMPIRKKSKDGKGSTIYL
W
EFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPDMNYETMGRAL
RYYYQRGILAKV
E
GQRLVYQFKEMPKDLVVIDDEEESPETPEDSSQASTSSTPSTSTIRRASSRVGTRASPEDKDNPPWEKP
K
VQHTGLQPSASLELGLSVDEEVPTTSTMLASPLQSQARLTKTV
SSSPAPSNIHLGVAPVGPGSTVTLQT
I
PLTTVLTNGPPASTTAPTQLVLQSVPQVSTFKDTFTLQTSFPLNTNLQENQVATQGAPLILSGLPQLLA
G
ANPQSNPAPSQVIGAGSAGPSSQPPGTVIAAFIRTSSGTSVPVVKEGPLRSSSYVQGVVTGAPVEGLLV
P
EETLRELLRDQGHLQPLPSQVLSRGSHNLSLVGNQTLSPPSHPTVGLTPVAELELSSGSGPLFVTEPSV
T
RSPTQAPFSPFNPTSLIKMEPQDI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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