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Report for CCDS30127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30127.1 Public Mus musculus X Phf6 23 108 98 CCDS HistoryNCBI Gene:70998Re-query CCDS DB by CCDS ID:30127.1Re-query CCDS DB by GeneID:70998See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078944.12 ENSMUSP00000077971.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078944.12Link to Ensembl Protein Viewer:ENSMUSP00000077971.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078944Re-query CCDS DB by Protein ID:ENSMUSP00000077971
Original member Current member NCBI NM_027642.2 NP_081918.1 Accepted alive Link to Nucleotide Sequence:NM_027642.2Link to Protein Sequence:NP_081918.1Re-query CCDS DB by Nucleotide ID:NM_027642Re-query CCDS DB by Protein ID:NP_081918Link to BLAST:NP_081918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081918.1 364 Q9D4J7-1 364 100% 0 0

Chromosomal Locations for CCDS 30127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52916599 52916736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52917166 52917267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52931573 52931706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52931981 52932024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52940225 52940391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52940537 52940680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52942564 52942668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52945884 52946017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52953452 52953578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGTCAAGCTCAATTGAACAGAAAAAAGGGTCTACGAGACAGCGTAAATGTGGCTTTTGTAAGTCAAATA
GAGACAAGGAATGTGGACAGTTACTGATATCTGAAAACCAGAAGGTGGCAGCACACCACAAGTGCATGCT
GTTTTCGTCTGCTTTGGTGTCCTCACATTCTGATAATGAGAGTCTTGGTGGATTTTCTATTGAAGATGTT
CAAAAGGAAATTAAAAGAGGCACAAAGCTGATGTGTTCTCTTTGTCATTGTCCTGGAGCAACCATTGGCT
GTGATGTGAAAACCTGCCACAGGACATACCACTACCACTGTGCATTGCATGATAAAGCTCAGATCCGAGA
GAAACCTTCGCAAGGGATTTACATGGTTTATTGTCGAAAACACAAGAAAACTGCACATAACTCGGAAGCT
GATTTAGAAGAAAGTTTTAATGAGCATGAACTGGAGCCCTCATCTCCAAAGACTAAGAAGAAAAGTCGCA
AAGGAAGACCGAGAAAAACTAACCTTAAAGGCTTGCCAGAAGACAGCAGGTCCACATCCTCCCATGGAAC
AGATGAAATGGAAAGTAGCTCCTACCGAGATAGGTCTCCACACAGGAGCAGTCCTAATGATACCAGGCCT
AAATGTGGATTTTGCCATGTAGGGGAGGAAGAAAATGAAGCAAGAGGGAAATTGCATATATTTAATGCCA
AGAAGGCAGCCGCACATTACAAGTGCATGTTGTTTTCTTCTGGCACTGTTCAGCTCACAACAACATCAAG
AGCAGAATTTGGAGATTTCGATATTAAAACTGTACTTCAGGAGATTAAGCGAGGAAAAAGGATGAAATGT
ACACTTTGCAGTCAGCCTGGTGCTACTATTGGATGCGAAATAAAAGCCTGTGTTAAAACCTACCATTACC
ACTGTGGTGTACAAGACAAGGCAAAATACATTGAAAATATGTCACGAGGAATTTACAAACTCTATTGTAA
AAACCATAGTGGAAATGATGAGCGAGATGAAGAAGATGAGGAGCGAGAGAGTAAAAGCCGTGGAAGAGTA
GCGATTGATCAGCAGCTAACCCAGCAGCAGCTTAATGGAAACTAG

Translation (364 aa):
MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDV
QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEA
DLEESFNEHELEPSSPKTKKKSRKGRPRKTNLKGLPEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRP
KCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKC
TLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRV
AIDQQLTQQQLNGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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