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Report for CCDS30170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30170.1 Public Mus musculus X 4933436I01Rik 23 108 98 CCDS HistoryNCBI Gene:66780Re-query CCDS DB by CCDS ID:30170.1Re-query CCDS DB by GeneID:66780See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026325.1 ENSMUSP00000026325.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026325.1Link to Ensembl Protein Viewer:ENSMUSP00000026325.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000026325Re-query CCDS DB by Protein ID:ENSMUSP00000026325
Original member Current member NCBI NM_025763.1 NP_080039.1 Accepted alive Link to Nucleotide Sequence:NM_025763.1Link to Protein Sequence:NP_080039.1Re-query CCDS DB by Nucleotide ID:NM_025763Re-query CCDS DB by Protein ID:NP_080039Link to BLAST:NP_080039.1

Chromosomal Locations for CCDS 30170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 67919962 67921107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 67921269 67921412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGACAAGTTGGAAGAGAGTGCTGAAGATACAGACTCATGGACTTCACATACTAACCTGACAAAGAACA
AGATTTTCCTAAAGCCTGTATCTAGGGGTTCTGGCAAGAACTACACTGAATACATTTGCATAAGTAGTGA
ACAGAATGTACAGGTCCTAAAAAGGGTTAAAAAAAGTCAGAAAAAGAGACCAAAGGGAAAGTTCTGGGAA
AAACATACCACCCCTCTATGTAAACCTACAGAAGAAGGTGGAGGAACACCACACCCTGGAAAAAACAAGC
GGCAGAAAAAGAAGCGTAAAACGCGACATGAACGAAACAAAATGCTGCAGGACAAGCTGAAGATGCTGTG
GGGTCAGTATGCTCAGCTACAGAGTGAGATAAATATACTATTGGATCAATACTCTCACTTACCTGATGGA
GTGAAGACAAAATGTAACCACCATAAAAACCGGATGCACAAGAACAGAAATACACCATGTGGTCAAGACA
AACATCTCAAAAAGTTGGTGATCACACAGTTTGATCCAGACAAACAAGTTAAAGAAGAGATAAGCAGACA
CTACTATCAAGACAGACGTGAAAAGGAAGATAAGATCAAACTACTCAGTCATGACCAGCAAGGACAAGAA
GAGAGAATCACACACTTTGAACAAAAAAAGCACGTTAAGAGGAACACAAAACTTTATCGAAACAAGCGTG
TGAAAAAAAAGATGATCAGACACTACTATCAAGACAAGTATGCAAAGGAAGATAAGATCAAACTACTCAG
TCAGGACCAGCAAGAGCAAGAAGAGAGGATCACACATTTTGACCAAAATAAGGAAGTAGAGAGGAACACA
CAATTTTATCAAGGCAAACAAGAGAAAGAAAAGACGATCAGGCACTACTATCAAGACAGGCATGCAAAAG
AACATAAGATCACACTATTCATTTATGACCAACAAGGGCAAGAGGATGTGATCACACACTTAGACCAAAA
TAATCAAGAGGAGAGGAACACACTATTTGATCATGGCAATCAAGTGAAAGAGGAGAGGATCAAATTTTGC
TTTCCAAACAAGAAGGTAGATGAAGAGAGAACCACATTCTGCTCTCCAGAAAAGCAGGAGAATGGGGAGA
TACCGGTCCCCTTCTATCAACACACACCCCTGCATGGAGGGATGACCATTCTGCAACTACACGAACAAGT
AGCAGGAGATTATGCACAGGAGGCAAGCACAGATGCAAGGATGCATAGCTGGGACAATTACCTTCATTGC
TTGTATTATACAGACATCAGCCAGCTATGA

Translation (429 aa):
MDKLEESAEDTDSWTSHTNLTKNKIFLKPVSRGSGKNYTEYICISSEQNVQVLKRVKKSQKKRPKGKFWE
KHTTPLCKPTEEGGGTPHPGKNKRQKKKRKTRHERNKMLQDKLKMLWGQYAQLQSEINILLDQYSHLPDG
VKTKCNHHKNRMHKNRNTPCGQDKHLKKLVITQFDPDKQVKEEISRHYYQDRREKEDKIKLLSHDQQGQE
ERITHFEQKKHVKRNTKLYRNKRVKKKMIRHYYQDKYAKEDKIKLLSQDQQEQEERITHFDQNKEVERNT
QFYQGKQEKEKTIRHYYQDRHAKEHKITLFIYDQQGQEDVITHLDQNNQEERNTLFDHGNQVKEERIKFC
FPNKKVDEERTTFCSPEKQENGEIPVPFYQHTPLHGGMTILQLHEQVAGDYAQEASTDARMHSWDNYLHC
LYYTDISQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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