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Report for CCDS30345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30345.1 Public Mus musculus X Lpar4 23 108 98 CCDS HistoryNCBI Gene:78134Re-query CCDS DB by CCDS ID:30345.1Re-query CCDS DB by GeneID:78134See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060576.7 ENSMUSP00000053986.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060576.7Link to Ensembl Protein Viewer:ENSMUSP00000053986.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060576Re-query CCDS DB by Protein ID:ENSMUSP00000053986
Original member Current member NCBI NM_175271.4 NP_780480.2 Accepted alive Link to Nucleotide Sequence:NM_175271.4Link to Protein Sequence:NP_780480.2Re-query CCDS DB by Nucleotide ID:NM_175271Re-query CCDS DB by Protein ID:NP_780480Link to BLAST:NP_780480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780480.2 370 Q8BLG2 370 100% 0 0

Chromosomal Locations for CCDS 30345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106930212 106931324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGGTGACAGAAGATTTATTGACTTCCAATTCCAAGATTTAAATTCAAGTCTCAGACCCAGGTTGGGAA
ATGCAACTGCCAATAATACTTGCATTGTTGATGATTCCTTCAAGTATAATTTGAATGGTGCTGTCTATAG
TGTTGTATTCATCCTGGGTCTAATAACCAACAGTGCCTCCCTGTTTGTCTTCTGCTTCCGCATGAAAATG
AGAAGTGAGACGGCTATTTTCATCACCAACCTGGCCCTCTCTGATTTGCTTTTTGTTTGTACCCTACCTT
TCAAAATATTTTACAACTTTAATCGCCACTGGCCTTTTGGTGACACCCTCTGTAAGATCTCAGGGACTGC
GTTCCTCACCAACATCTATGGGAGCATGCTCTTCCTCACCTGCATCAGTGTGGATCGTTTCCTAGCCATT
GTCTATCCCTTCCGATCGCGTACCATCAGGACCAGGAGGAATTCCGCCATTGTGTGCGCTGGAGTCTGGA
TCCTAGTCCTCAGTGGTGGTATTTCAGCTTCTTTGTTCTCCACCACTAATGTCAACAATGCGACCACCAC
TTGCTTTGAAGGCTTCTCCAAACGTGTCTGGAAGACATACCTGTCCAAGATCACTATATTCATTGAAGTT
GTTGGATTCATCATTCCTCTGATATTGAATGTTTCTTGTTCTTCTGTGGTGCTTAGAACCCTCCGCAAGC
CTGCAACATTGTCTCAGATTGGGACCAATAAAAAAAAAGTGTTGAAGATGATCACAGTGCATATGGCAGT
GTTTGTGGTATGCTTTGTACCATACAACTCCGTTCTCTTTTTATATGCCTTGGTACGCTCCCAAGCCATT
ACTAATTGCTTATTGGAAAGGTTTGCAAAGATCATGTACCCAATTACCTTGTGCCTTGCAACTCTGAATT
GTTGCTTTGATCCTTTTATCTATTACTTCACTCTTGAATCCTTTCAGAAGTCCTTTTATATCAATACACA
TATAAGGATGGAGTCGCTGTTTAAGACTGAGACACCTCTGACCCCCAAACCTTCCCTTCCAGCTATCCAA
GAGGAAGTTAGTGATCAAACAACAAATAATGGTGGTGAATTAATGCTGGAATCCACCTTCTAG

Translation (370 aa):
MGDRRFIDFQFQDLNSSLRPRLGNATANNTCIVDDSFKYNLNGAVYSVVFILGLITNSASLFVFCFRMKM
RSETAIFITNLALSDLLFVCTLPFKIFYNFNRHWPFGDTLCKISGTAFLTNIYGSMLFLTCISVDRFLAI
VYPFRSRTIRTRRNSAIVCAGVWILVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEV
VGFIIPLILNVSCSSVVLRTLRKPATLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYALVRSQAI
TNCLLERFAKIMYPITLCLATLNCCFDPFIYYFTLESFQKSFYINTHIRMESLFKTETPLTPKPSLPAIQ
EEVSDQTTNNGGELMLESTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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