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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS30351.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
30351.2 |
Public |
Mus musculus |
X |
Tbx22 |
23 |
108 |
98 |
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Public Note for CCDS 30351.2 |
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript data, and by conservation in rat. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 30351.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000168174.8 |
ENSMUSP00000128247.2 |
Accepted |
alive |
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NCBI |
NM_181319.5 |
NP_851836.2 |
Accepted |
alive |
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Chromosomal Locations for CCDS 30351.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1596 nt): ATGGACACAGAGATACCCACTGCTGCTTCTAGCCTACCAGGGATGGCTCTGAGCTCTCGCGCGCACGCCT TCTCCGTGGAGGCCTTAATGGGGAGACCCAGCAAAAGAAAAGCTCAAGACCCAAGAGAGGAGATGCAGCC TGAGCTGCAGGAGGAGCAGTTCGTGGAGGAAGGGGAGGAGATACTGAGGAGCCCTTCTAGGGACAGTCAA CAGCCCGAAAAGCGACTCAAGGCAGAATCTTCAAAAACTGTTTTCTCCTGCTCTGACGAGAGCAACAGCC AGGAAAGTCTGCAAGAAGAAAGTGTTATCCAAGTGGAGCTTCAGGGATCTGACCTATGGAAGAGATTCCA CGACATTGGCACTGAGATGATCATTACCAAGGCGGGCAGACGTATGTTTCCTTCTGTTCGGATCAAGGTG AAAGGGATGGACCCTGTGAAGCAGTACTATGTGATTTTGGACGTGGTACCGGTGGATTCCAAACGCTATA GGTATGTGTATCACAGCTCACAGTGGATGGTAGCTGGAAATACTGACCATTCGTGCATAACTCCCAGATT CTATGTCCACCCGGACTCCCCTTGCTCTGGAGAAAACTGGATGCGTCAAATCATCTCTTTTGATCGAGTG AAACTCACCAACAATGAGATGGATGACAAGGGCCATATCATTCTGCAGTCCATGCATAAGTACAACCCCC GTGTGCATGTGGTGGAACAGGACAGCAGGATTGACCTGTCCCTGATTGAGTCCTTTCCTACGGAAGGCGT TAAAACATTCTCCTTTAAAGAAACTGAATTCACTACTGTGACAGCTTACCAAAACCAGCAGATTACCAAA CTGAAAATAGACAGGAATCCTTTTGCCAAAGGATTTAGAGATCCTGGGAGAAATAGGGGTGTCTTAGATG GATTTTTAGAGACCTACCCATGGATGCCTTCTTTCTCTATGGATTTTAAAACTTTTGTCACAGACACACA AAGTGGAAGCAGTGGCTCATCTCCAGTGACCTCTAGTGGAGGAGCTCCCTCTCCTTTGAACTCCTTACTT TCTCCATCTTGTTCTCCACCTATGGTTTACATACCTCCAAGCTCCTTTGGGATGACCTATCCAGATGCAT ACCTGCACAGTGTCAACATACCCTTCTGCTACAGAATTTGTCCAACTAATAATTGGCGATCACAACCTTT TGTTTTACCTACTCCTGAAAGGCTACCAAGTTTCATCATTCCTCAGACCTTACCCCCACTCATGATGGAA GTCCCAGTGGTATCCTCCAGGGGCATCATCAATCCAAACAGTGGCTTACATGAAGACTGCAATGGGCAGT GTCTACAAGCATCTCATTCTGCCAATCAAATGTTATATGGATTACAGAATCCTGGAAACATTTTCCATCC AAACGCCATTGCCCAAGAAGCAATCAGTTATCCTTTTCATCCTCCTAATGGCTGTTATAGGTACACCATC TCCATGCCACCTAGACTGGAAAATGTTGCCAGTCACCTCAGTGAAAATGGTACCAGTCAGATTTCTTTTA CTGAAGGTAGCTGTGATCATTCCCATTGGTATCCAGCCATTAACCATTACCTTTAA
Translation (531 aa): MDTEIPTAASSLPGMALSSRAHAFSVEALMGRPSKRKAQDPREEMQPELQEEQFVEEGEEILRSPSRDSQ QPEKRLKAESSKTVFSCSDESNSQESLQEESVIQVELQGSDLWKRFHDIGTEMIITKAGRRMFPSVRIKV KGMDPVKQYYVILDVVPVDSKRYRYVYHSSQWMVAGNTDHSCITPRFYVHPDSPCSGENWMRQIISFDRV KLTNNEMDDKGHIILQSMHKYNPRVHVVEQDSRIDLSLIESFPTEGVKTFSFKETEFTTVTAYQNQQITK LKIDRNPFAKGFRDPGRNRGVLDGFLETYPWMPSFSMDFKTFVTDTQSGSSGSSPVTSSGGAPSPLNSLL SPSCSPPMVYIPPSSFGMTYPDAYLHSVNIPFCYRICPTNNWRSQPFVLPTPERLPSFIIPQTLPPLMME VPVVSSRGIINPNSGLHEDCNGQCLQASHSANQMLYGLQNPGNIFHPNAIAQEAISYPFHPPNGCYRYTI SMPPRLENVASHLSENGTSQISFTEGSCDHSHWYPAINHYL
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