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Report for CCDS30356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30356.1 Public Mus musculus X Rps6ka6 23 108 98 CCDS HistoryNCBI Gene:67071Re-query CCDS DB by CCDS ID:30356.1Re-query CCDS DB by GeneID:67071See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 30356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082034.12 ENSMUSP00000080694.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082034.12Link to Ensembl Protein Viewer:ENSMUSP00000080694.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082034Re-query CCDS DB by Protein ID:ENSMUSP00000080694
Original member Current member NCBI NM_025949.3 NP_080225.2 Accepted alive Link to Nucleotide Sequence:NM_025949.3Link to Protein Sequence:NP_080225.2Re-query CCDS DB by Nucleotide ID:NM_025949Re-query CCDS DB by Protein ID:NP_080225Link to BLAST:NP_080225.2

Chromosomal Locations for CCDS 30356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 111389780 111389911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111391087 111391218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111398581 111398698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111400208 111400284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111404678 111404839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111407456 111407614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111408645 111408734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111409333 111409455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111409850 111409980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111410535 111410637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111412705 111412763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111413538 111413626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111413838 111413908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111417098 111417240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111420912 111420949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111421670 111421776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111432614 111432693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111434317 111434397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111435187 111435268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111439153 111439269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111446231 111446290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111450292 111450354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111462850 111463101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111486669 111486782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGCTGAATTTTAGAAGGACACGCCACACGCCATCTGGCCACAGGTCCAACTCTAACTTGAACCTGTTCT
GTTGTCTTCCATTTTTTGGATGTCGTCGGCGATCCAAGAGTCGGCAGCGGGCGGGGACCCCCGTGGTCCC
TCTTTTGAGGTACCCGCGGCTGGCGAGGTCGGCAGTCACCCAGCGCGAGACCTGGTCCTTCGAAGACGAC
CAGGAGCCCGCTCAGCAGACGGGATGCATGCTGGTGCTGGGGCCAGGCAGCTTCTTCTCGAGAGCCCCTG
AAGCGGCGATGCTACCGTTCGCCCCTGTGGAGGATCCCTGGGACCAAGAAGACATGGAGGTGTTCGGCAG
CACGAGCAGTAGCGAGCCACAGGTTGTGTTTACCATGAAGAACGCAGCAACGGTTATGCGGGAGCATGAA
CGCAAAGAGGTAAATGATCTGAAAATGGTTGATGAGCCAATGGAAGAGGGAGAGCCAGTTTCTTGCCGGC
GGGAAGAATTGGTTAAGGAGATACCTATTACACAGCATGTTAAAGAAGGATACGAGAAAGCAGATCCCGC
ACAGTTTGACTTGCTCAAGGTTCTTGGTCAGGGATCTTTTGGAAAGGTTTTTCTTGTTAGAAAGAAGACT
GGTCCTGATGCTGGGCAGCTCTATGCAATGAAGGTGTTAAGAAAAGCTTCTTTGAAAGTTCGAGACCGAG
TTCGCACAAAGATGGAGAGGGATATCTTGGTGGAAGTAAATCATCCCTTTATCGTCAAACTGCACTATGC
TTTTCAGACTGAAGGGAAGCTGTACTTAATATTGGATTTCCTCAGGGGAGGAGATGTCTTCACAAGATTA
TCCAAAGAGGTTCTTTTTACAGAGGAAGATGTGAAATTCTACCTTGCAGAATTGGCCCTGGCTTTGGATC
ATCTACATCGATTAGGAATTGTTTATAGAGACCTGAAACCAGAAAACATCTTACTTGATGAAATAGGACA
TATCAAGTTAACAGATTTTGGGCTTAGCAAAGAGTCAGTGGATCAAGAAAAGAAGGCCTACTCATTTTGT
GGTACTGTAGAATATATGGCCCCTGAAGTAGTAAACAGACGAGGCCATTCTCAGAGTGCTGATTGGTGGT
CATATGGTGTACTTATGTTTGAAATGCTTACTGGCACTTTGCCATTTCAAGGGAAAGACAGAAATGAGAC
CATGAATATGATACTGAAAGCAAAACTTGGAATGCCCCAATTCCTTAGTGCTGAAGCACAAAGTCTATTA
AGGATGTTATTCAAAAGGAATCCAGCAAATAGATTGGGGTCAGAAGGAGTTGAAGAAGTCAAAAGACATG
CTTTTTTTGCTTCCATTGACTGGAATAAACTATATAAAAGAGAAGTCCAGCCTCCTTTCAGACCTGCTTC
TGGAAAACCGGATGATACCTTCTGTTTTGATCCTGAATTTACTGCCAAAACACCTAAAGATTCTCCTGGT
TTGCCAGCCAGTGCAAACGCTCATCAACTCTTCAAAGGATTCAGTTTTGTTGCGACTTCTATTGCCGAAG
AATATAAAATCACTCCTGTTACAAGTTCAAATGTATTACCAATCGTTCAGATAAATGGAAATGCTGCTCA
ATTTAGTGAAGCTTATGAATTGAAAGAGGATATTGGTATTGGTTCTTATTCTGTTTGCAAGCGATGCATA
CACTCAGCTTCCAATGTGGAATTTGCAGTCAAGATCATTGATAAAAATAAGAGAGACCCCTCAGAAGAAA
TTGAAATTTTGATGCGCTATGGACAACATCCCAACATTATCTCTTTAAAGGAGGTCTTTGATGATGGGAA
ATATGTTTACCTTGTTACGGACTTGATGAAAGGAGGAGAACTTCTGGATCGGATTCTCAAAAAGAAATGT
TTCTCAGAGCAGGAAGCTAGTAATGTGCTGTATGTAATAACCAAGACAGTTGAATGCCTTCATTCTCAAG
GAGTCGTTCATCGTGATCTTAAGCCCAGTAATATTTTATATATGGATGAGTCAGCCCATCCAGATTCAAT
CAAGATCTGTGATTTTGGGTTTGCAAAACAGCTTCGTGGAGAAAATGGACTTCTGTTAACTCCGTGCTAC
ACCGCAAACTTTGTAGCACCTGAGGTTCTCACTCAACAGGGATATGATGCTGCCTGTGATATTTGGAGCT
TAGGAGTCCTTTTGTACACAATGTTGGCTGGCTACACTCCATTTTCCAACGGCCCCAATGATACTCCTGA
GGAAATACTGCTGCGCATAGGCAACGGGAGGTTCTCTTTGAGTGGTGGAATCTGGGACAATATTTCACGT
GGAGCAAAGGATTTGCTTTCTCATATGCTTCACATGGACCCACATCAGCGTTATACTGCTGAGCAAGTAT
TAAAGCACCCTTGGATAACCCAAAGAGAACAACTGCCGCGCCATCAGCCAAACTCAGATGAGCCACCACA
GGAAGCAGTGGCAGCACCATATTCTGTCTTGGCTCGGAACCCAAACAGGCATCATCCAATCCTGGAGCCT
GTTACTGCTTCACGTTTAGCTCAGAGGCGGAACATGAAAAAGCGAACATCAACTGGCTTGTAA

Translation (860 aa):
MLNFRRTRHTPSGHRSNSNLNLFCCLPFFGCRRRSKSRQRAGTPVVPLLRYPRLARSAVTQRETWSFEDD
QEPAQQTGCMLVLGPGSFFSRAPEAAMLPFAPVEDPWDQEDMEVFGSTSSSEPQVVFTMKNAATVMREHE
RKEVNDLKMVDEPMEEGEPVSCRREELVKEIPITQHVKEGYEKADPAQFDLLKVLGQGSFGKVFLVRKKT
GPDAGQLYAMKVLRKASLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDVFTRL
SKEVLFTEEDVKFYLAELALALDHLHRLGIVYRDLKPENILLDEIGHIKLTDFGLSKESVDQEKKAYSFC
GTVEYMAPEVVNRRGHSQSADWWSYGVLMFEMLTGTLPFQGKDRNETMNMILKAKLGMPQFLSAEAQSLL
RMLFKRNPANRLGSEGVEEVKRHAFFASIDWNKLYKREVQPPFRPASGKPDDTFCFDPEFTAKTPKDSPG
LPASANAHQLFKGFSFVATSIAEEYKITPVTSSNVLPIVQINGNAAQFSEAYELKEDIGIGSYSVCKRCI
HSASNVEFAVKIIDKNKRDPSEEIEILMRYGQHPNIISLKEVFDDGKYVYLVTDLMKGGELLDRILKKKC
FSEQEASNVLYVITKTVECLHSQGVVHRDLKPSNILYMDESAHPDSIKICDFGFAKQLRGENGLLLTPCY
TANFVAPEVLTQQGYDAACDIWSLGVLLYTMLAGYTPFSNGPNDTPEEILLRIGNGRFSLSGGIWDNISR
GAKDLLSHMLHMDPHQRYTAEQVLKHPWITQREQLPRHQPNSDEPPQEAVAAPYSVLARNPNRHHPILEP
VTASRLAQRRNMKKRTSTGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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