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Report for CCDS30382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30382.1 Public Mus musculus X Dmtf1l 23 108 98 CCDS HistoryNCBI Gene:237029Re-query CCDS DB by CCDS ID:30382.1Re-query CCDS DB by GeneID:237029See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081074.4 ENSMUSP00000079860.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081074.4Link to Ensembl Protein Viewer:ENSMUSP00000079860.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081074Re-query CCDS DB by Protein ID:ENSMUSP00000079860
Original member Current member NCBI NM_177705.3 NP_808373.1 Accepted alive Link to Nucleotide Sequence:NM_177705.3Link to Protein Sequence:NP_808373.1Re-query CCDS DB by Nucleotide ID:NM_177705Re-query CCDS DB by Protein ID:NP_808373Link to BLAST:NP_808373.1

Chromosomal Locations for CCDS 30382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 126814068 126815480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGAGCTCTGTCTTACTTAGTGAGGACTCAGACAGGAACCTCATGCTTTGCCTTCAGAATGAAGCTAATG
AAATGGAAAATCCTACTGAACCTCTGAATAAGAGGCCTTGTTTGTCCTCTGAAGTTGATTCTACTTCGTA
TATGTCAGCTCTTGAATTCCCACTACAAGAAATGGAGCAAAGTTTTGGTTTGGTCACAACCACAGCCACA
GAGGTGGCTGAGGAAGAGTTTGGTGGGGAAAATATGATGCAATTCGAGGTTTTAAAAGATGACAAACAAT
ATGAAGTTTTCCCCTTGCCTAACAAGGAAGAGTCAGTAGTTAGCCAAGCATGGTTCACAAGTAAGGAAGC
TAAGGATGCTCTAACTCATCAAGGACAGAAATGGAAGCAGGGGATGTGGTCCAAGGAAGAAACAGCTATT
CTGATGAACAACATTGAAAGGTATATGAAGGACCATGGAGTAGAGAATCCTGCAGAAATCATTTTTAAGA
TGGCAAAAGGTAAAAGAAAAGATTTCTACAGGTCTGTATCATTGGGTCTGAATAGACCTTTGTTTTCAGT
TTATAGAAGAGTGGTCCGAATGTATGATGACAGAAACCATGTGGGTAAGTACAGCCCTGAGGAAATAGAG
AAGCTCAAGGAGCTCTGGCAGAAGCATGGCAATGACTGGATAACAATAGGGGCCGCCATGGGAAGAAGTC
CATCTTCGGTCAAAGACCGGTGCCGACTGATGAAGGATACTTGCAACACGGGGAAATGGACCGAAGAAGA
AGAACAGCTTCTTGGCGATGTGGTTCATGAATTGACATGCACTGAGGTGGATGAGAAAGTTACCCATGGT
GTGTGTTGGGCAACAGTGGCTCAACGAGTGGGTACTCGCTCAGCAAAGCAGTGTCGTGCTAAATGGCTCA
ACTACTTGAACTGGAAACAGACTGGTGGTATTGAGTGGACAAGGAAAGATGAAGTCACTCTCATCCAAAG
GCTAGTAGAGCTTGATGTATCCGATGAAAGTGAAATTCGCTGGGATGAATTAGCTAAAGGATGGGAAAGT
GTTCGTTCACCACAATGGCTGCGAAATAAATGGTGGATCATCAAAAGGCAAATTACAAATCATAAAGATT
TTGCATTCCCAGTCCTAGTAAGATGTCTTCAACAAGAATATGAAAGCCAAAATGCCAGCCTCAGGTTTTG
GGAGAATAAATCAGGATCTGAAGTACCAGATAGCAACCCTGATATCATTTTTCAACAAGTCCCCTTTGGA
GTCACAAGTATAGAAAATAATAATGCATCCATCTGTACTGACCCCATGACAGGATTGCAAATTTCATTCC
AGCTCATCCCCAGACCCACAACAGAATTACCTGATGCTGTTGTTGACTCTGAAACCATAACCCTGCCCAC
TGGACCACAGTAG

Translation (470 aa):
MSSVLLSEDSDRNLMLCLQNEANEMENPTEPLNKRPCLSSEVDSTSYMSALEFPLQEMEQSFGLVTTTAT
EVAEEEFGGENMMQFEVLKDDKQYEVFPLPNKEESVVSQAWFTSKEAKDALTHQGQKWKQGMWSKEETAI
LMNNIERYMKDHGVENPAEIIFKMAKGKRKDFYRSVSLGLNRPLFSVYRRVVRMYDDRNHVGKYSPEEIE
KLKELWQKHGNDWITIGAAMGRSPSSVKDRCRLMKDTCNTGKWTEEEEQLLGDVVHELTCTEVDEKVTHG
VCWATVAQRVGTRSAKQCRAKWLNYLNWKQTGGIEWTRKDEVTLIQRLVELDVSDESEIRWDELAKGWES
VRSPQWLRNKWWIIKRQITNHKDFAFPVLVRCLQQEYESQNASLRFWENKSGSEVPDSNPDIIFQQVPFG
VTSIENNNASICTDPMTGLQISFQLIPRPTTELPDAVVDSETITLPTGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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