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Report for CCDS30398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30398.1 Public Mus musculus X Armcx1 23 108 98 CCDS HistoryNCBI Gene:78248Re-query CCDS DB by CCDS ID:30398.1Re-query CCDS DB by GeneID:78248See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30398.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035748.13 ENSMUSP00000043965.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035748.13Link to Ensembl Protein Viewer:ENSMUSP00000043965.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035748Re-query CCDS DB by Protein ID:ENSMUSP00000043965
Original member Current member EBI ENSMUST00000051256.9 ENSMUSP00000053909.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051256.9Link to Ensembl Protein Viewer:ENSMUSP00000053909.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000051256Re-query CCDS DB by Protein ID:ENSMUSP00000053909
Original member Current member EBI ENSMUST00000113197.1 ENSMUSP00000108822.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113197.1Link to Ensembl Protein Viewer:ENSMUSP00000108822.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113197Re-query CCDS DB by Protein ID:ENSMUSP00000108822
Original member Current member EBI ENSMUST00000113198.7 ENSMUSP00000108823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113198.7Link to Ensembl Protein Viewer:ENSMUSP00000108823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113198Re-query CCDS DB by Protein ID:ENSMUSP00000108823
Original member Current member EBI ENSMUST00000113199.7 ENSMUSP00000108824.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113199.7Link to Ensembl Protein Viewer:ENSMUSP00000108824.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113199Re-query CCDS DB by Protein ID:ENSMUSP00000108824
Original member Current member EBI ENSMUST00000113201.7 ENSMUSP00000108826.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113201.7Link to Ensembl Protein Viewer:ENSMUSP00000108826.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113201Re-query CCDS DB by Protein ID:ENSMUSP00000108826
Original member Current member NCBI NM_001166377.1 NP_001159849.1 Accepted alive Link to Nucleotide Sequence:NM_001166377.1Link to Protein Sequence:NP_001159849.1Re-query CCDS DB by Nucleotide ID:NM_001166377Re-query CCDS DB by Protein ID:NP_001159849Link to BLAST:NP_001159849.1
Original member Current member NCBI NM_001166378.1 NP_001159850.1 Accepted alive Link to Nucleotide Sequence:NM_001166378.1Link to Protein Sequence:NP_001159850.1Re-query CCDS DB by Nucleotide ID:NM_001166378Re-query CCDS DB by Protein ID:NP_001159850Link to BLAST:NP_001159850.1
Original member Current member NCBI NM_001166379.1 NP_001159851.1 Accepted alive Link to Nucleotide Sequence:NM_001166379.1Link to Protein Sequence:NP_001159851.1Re-query CCDS DB by Nucleotide ID:NM_001166379Re-query CCDS DB by Protein ID:NP_001159851Link to BLAST:NP_001159851.1
Original member Current member NCBI NM_001166380.1 NP_001159852.1 Accepted alive Link to Nucleotide Sequence:NM_001166380.1Link to Protein Sequence:NP_001159852.1Re-query CCDS DB by Nucleotide ID:NM_001166380Re-query CCDS DB by Protein ID:NP_001159852Link to BLAST:NP_001159852.1
Original member Current member NCBI NM_030066.3 NP_084342.1 Accepted alive Link to Nucleotide Sequence:NM_030066.3Link to Protein Sequence:NP_084342.1Re-query CCDS DB by Nucleotide ID:NM_030066Re-query CCDS DB by Protein ID:NP_084342Link to BLAST:NP_084342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159849.1 456 Q9CX83 456 100% 0 0
NP_001159850.1 456 Q9CX83 456 100% 0 0
NP_001159851.1 456 Q9CX83 456 100% 0 0
NP_001159852.1 456 Q9CX83 456 100% 0 0
NP_084342.1 456 Q9CX83 456 100% 0 0

Chromosomal Locations for CCDS 30398.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134720151 134721521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGGTCGCACCCGGGAAGCTGGATGTGTGGCTGCAGGCATGGTCATTGGGGCTGGTGCCTGCTACTGTG
TATACAGACTGACCTGGGGAAAAGATGAGAATGAGAAGTTGTGGGATGAGGAAGAGGAGGAAGAGGAGGA
AGAGGAGGAAAAGTCTTGTAGTGACAAAACTGAGAAAGAACTTAAGACTAATGTTGGGGTAGGGGCGAGA
GGCAAACCTCAAGATGACTCAAAGTCCAAGGTTGAGGTGAATGTGGGACCTGAGAATGGTCCAGGTGTAA
AGAAAGAAGTGCACCCAGAATCCCAGAGTGGGGGTGGACTAGAGGCTAAGGCCAAGGCCCTTTTCAAGAC
TCTAAAGGAACAGGCACGTGCAAAGGCAGGCAGAGGCATAAGGCTTCCTAACATCTCTAGGAATAGGACC
CTGACATCAAGTTTGCCTTGCCCAGGAGGCAGGGGTGGAGGCTGCCACCCGGGAAGGACTGGTTCTAGGG
CTAGGAACAGGACAAGTGGGAAAGTCAAGAGAAAGAACCGAAGCAAGAGCAACAAGGCTCCAGCCACAGC
ATGGCCTGTACGCAAGGGCAAGTTCAGCTTTCCCTATAAAATTGATGATATTCTGAGCGCCCCTGATCTT
CAAAAGGTCCTGAACATCCTGGAGAGAACAAATGACCCTTTTACTCAGGAAGTAGCACTGGTCACACTGG
GTAACAATGCAGCATATTCATTTAATCAAAACGCCATCCGTGAGCTGGGTGGAGTCCCCATTATTGCAAA
GCTGATAAAAACAAGAGACCCCATTATTAGGGAAAAGACTTACAATGCTCTTAATAACTTGAGCGTTAAT
TCTGAGAATCAGGGCAAGATTAAGACTTATATCAGTCAAGTGTGTGACGATACCATGGTTTGCCGCTTGG
ACTCAGCCGTCCAGATGGCTGGATTAAGACTCCTTACCAACATGACTGTAACTAATCACTACCAACATTT
GCTTTCCTATTCTTTCCCAGATTTCTTTGCTTTGTTATTCCTGGGAAACCACTTCACCAAGATACAGACT
ATGAAACTGATTATAAATTTTACTGAAAACCCAGCCATGACAAGAGAGCTGGTCAGTTGTAAAGTACCTT
CGGAATTGATTTCTCTGTTTAATAAAGAATGGGATAGAGAGATTCTTCTTAACATTCTTACCCTCTTTGA
AAATATAAACGATAACATAAAAAGTGAAGGGCTTGCATCCTCCAGGAAGGAATTCAGCAGGAGCTCACTG
TTTTTCTTATTTAAAGAGTCTGGAGTATGTGTGAAGAAAATCAAAGCATTAGCAAGCCATAAGGATCTGG
TGGTCAAAGTGAAAGTTCTAAAAGTCTTAACAAAATTATAA

Translation (456 aa):
MGRTREAGCVAAGMVIGAGACYCVYRLTWGKDENEKLWDEEEEEEEEEEEKSCSDKTEKELKTNVGVGAR
GKPQDDSKSKVEVNVGPENGPGVKKEVHPESQSGGGLEAKAKALFKTLKEQARAKAGRGIRLPNISRNRT
LTSSLPCPGGRGGGCHPGRTGSRARNRTSGKVKRKNRSKSNKAPATAWPVRKGKFSFPYKIDDILSAPDL
QKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGGVPIIAKLIKTRDPIIREKTYNALNNLSVN
SENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLLTNMTVTNHYQHLLSYSFPDFFALLFLGNHFTKIQT
MKLIINFTENPAMTRELVSCKVPSELISLFNKEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSL
FFLFKESGVCVKKIKALASHKDLVVKVKVLKVLTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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