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Report for CCDS30459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30459.1 Public Mus musculus X Htr2c 23 108 98 CCDS HistoryNCBI Gene:15560Re-query CCDS DB by CCDS ID:30459.1Re-query CCDS DB by GeneID:15560See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036303.8 ENSMUSP00000043936.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036303.8Link to Ensembl Protein Viewer:ENSMUSP00000043936.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000036303Re-query CCDS DB by Protein ID:ENSMUSP00000043936
Original member Current member EBI ENSMUST00000096299.8 ENSMUSP00000094021.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096299.8Link to Ensembl Protein Viewer:ENSMUSP00000094021.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000096299Re-query CCDS DB by Protein ID:ENSMUSP00000094021
Original member Current member NCBI NM_008312.4 NP_032338.3 Accepted alive Link to Nucleotide Sequence:NM_008312.4Link to Protein Sequence:NP_032338.3Re-query CCDS DB by Nucleotide ID:NM_008312Re-query CCDS DB by Protein ID:NP_032338Link to BLAST:NP_032338.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032338.3 459 P34968 459 100% 0 0

Chromosomal Locations for CCDS 30459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 147072453 147072487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147075731 147076047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147169570 147169770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147193769 147194595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGTGAACCTGGGCACTGCGGTGCGCTCACTCCTTGTGCACCTAATTGGCCTATTGGTTTGGCAGTTCG
ATATTTCCATAAGTCCAGTAGCAGCTATAGTAACTGACACTTTTAATTCCTCCGATGGTGGACGCTTGTT
TCAATTCCCGGACGGGGTACAAAACTGGCCAGCACTTTCAATAGTCGTGATTATAATCATGACAATAGGG
GGCAACATTCTCGTTATCATGGCAGTAAGCATGGAGAAGAAACTGCACAATGCTACCAATTATTTCTTAA
TGTCCCTAGCCATTGCTGATATGCTGGTGGGACTACTTGTCATGCCCCTGTCTCTGCTTGCAATTCTTTA
TGATTATGTCTGGCCTTTACCTAGATATTTGTGCCCCGTCTGGATTTCACTAGATGTGCTATTTTCAACT
GCGTCCATCATGCACCTCTGCGCCATATCGCTGGACCGGTATGTAGCAATACGTAATCCTATTGAGCATA
GCCGGTTCAATTCGCGGACTAAGGCCATCATGAAGATTGCCATCGTTTGGGCAATATCAATAGGAGTTTC
AGTTCCTATCCCTGTGATTGGACTGAGGGACGAAAGCAAAGTGTTCGTGAATAATACTACCTGCGTGCTC
AATGACCCGAACTTCGTTCTCATCGGGTCCTTCGTGGCATTCTTCATCCCGTTGACAATTATGGTGATCA
CCTACTTCTTAACGATCTACGTCCTACGCCGTCAAACCCTGATGTTACTTCGAGGTCACACCGAGGAGGA
ACTGCGTAATATCAGCCTGAACTTTCTAAAGTGCTGCTGCAAGAAGGGTGATGAGGAAGAGAACGCTCCC
AACCCCAATCCAGATCAGAAGCCACGTCGAAAGAAGAAAGAAAAGCGGCCTAGAGGCACCATGCAAGCTA
TCAACAATGAGAAGAAAGCTTCCAAAGTCCTTGGCATTGTATTCTTTGTGTTTCTGATCATGTGGTGCCC
GTTTTTCATCACCAATATCCTGTCGGTGCTTTGTGGGAAGGCCTGTAACCAAAAGCTAATGGAGAAACTT
CTCAATGTGTTTGTTTGGATTGGCTATGTGTGTTCAGGCATCAATCCTCTGGTGTACACTCTCTTCAACA
AAATTTACCGAAGGGCTTTCTCTAAATATTTGCGCTGCGATTATAAGCCAGACAAAAAGCCTCCTGTTCG
ACAGATTCCTAGGGTTGCTGCCACTGCTTTGTCTGGGAGGGAGCTCAATGTTAACATTTATCGGCATACC
AATGAACGTGTAGTTAGGAAAGCTAATGACACAGAGCCTGGCATAGAGATGCAGGTAGAGAATTTAGAGC
TGCCGGTCAATCCCTCTAATGTGGTCAGCGAGAGGATTAGTAGTGTGTAA

Translation (459 aa):
MVNLGTAVRSLLVHLIGLLVWQFDISISPVAAIVTDTFNSSDGGRLFQFPDGVQNWPALSIVVIIIMTIG
GNILVIMAVSMEKKLHNATNYFLMSLAIADMLVGLLVMPLSLLAILYDYVWPLPRYLCPVWISLDVLFST
ASIMHLCAISLDRYVAIRNPIEHSRFNSRTKAIMKIAIVWAISIGVSVPIPVIGLRDESKVFVNNTTCVL
NDPNFVLIGSFVAFFIPLTIMVITYFLTIYVLRRQTLMLLRGHTEEELRNISLNFLKCCCKKGDEEENAP
NPNPDQKPRRKKKEKRPRGTMQAINNEKKASKVLGIVFFVFLIMWCPFFITNILSVLCGKACNQKLMEKL
LNVFVWIGYVCSGINPLVYTLFNKIYRRAFSKYLRCDYKPDKKPPVRQIPRVAATALSGRELNVNIYRHT
NERVVRKANDTEPGIEMQVENLELPVNPSNVVSERISSV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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