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Report for CCDS30491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30491.1 Public Mus musculus X Magea2 23 108 98 CCDS HistoryNCBI Gene:17138Re-query CCDS DB by CCDS ID:30491.1Re-query CCDS DB by GeneID:17138See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069477.7 ENSMUSP00000069832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069477.7Link to Ensembl Protein Viewer:ENSMUSP00000069832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000069477Re-query CCDS DB by Protein ID:ENSMUSP00000069832
Original member Current member EBI ENSMUST00000112559.7 ENSMUSP00000108178.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112559.7Link to Ensembl Protein Viewer:ENSMUSP00000108178.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112559Re-query CCDS DB by Protein ID:ENSMUSP00000108178
Original member Current member EBI ENSMUST00000178950.1 ENSMUSP00000136214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178950.1Link to Ensembl Protein Viewer:ENSMUSP00000136214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178950Re-query CCDS DB by Protein ID:ENSMUSP00000136214
Original member Current member NCBI NM_020016.1 NP_064400.1 Accepted alive Link to Nucleotide Sequence:NM_020016.1Link to Protein Sequence:NP_064400.1Re-query CCDS DB by Nucleotide ID:NM_020016Re-query CCDS DB by Protein ID:NP_064400Link to BLAST:NP_064400.1

Chromosomal Locations for CCDS 30491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 155027624 155028586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCTGACTCCCATAACACCCAATACTGCAGCCTCCAAGAGAGTGCTCAGGCCCAACAGGAATTAGACA
ATGACCAGGAGACCATGGAGACATCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAG
TGGAATACCAAGTCCTCCCCAGAGTCCTCAGAGAGCCTACTCTCCCTGTGTGGCACTGGCCTCCATCCCT
GATAGCCCATCTGAGGAAGCTTCCATCAAAGGATCAGGGGGCCTGGAAGACCCACTTTATTTGTTGCACA
ATGCACAGAACACAAAGGTGTATGACTTGGTGGACTTTCTGGTTTTAAACTATCAAATGAAGGCATTCAC
TACCAAAGCAGAAATGTTGGAAAGTATTGGTAGAGAGTATGAGGAGTACTACCCTCTGATCTTTAGTGAG
GCCTCTGAGTGCTTGAAGATGGTCTTTGGCCTTGACATGGTAGAAGTGGACCCCTCTGTCCACTCCTATA
TCCTTGTCACTGCCCTGGGGATCACCTATGATGGCATGATGACTGATGTCCTGGGTATGCCCAAGACAGG
TATCCTCATAGCTGTACTGAGTGTCATTTTCATGAAGGGAAACTATGTCAGTGAGGAGATTATCTGGGAA
ATGGTGAATAACATAGGATTGTGTGGTGGGAGGGATCCTTACATACATAAAGACCCCAGGAAGCTCATCT
CTGAGGAGTTTGTGCAGGAAGGGTGCCTGAAATACAGGCAGGTGCCCAATAGTGATCCTCCTAGCTATGG
GTTCCTGTGGGGCCCAAGGGCTTTTGCAGAAACCAGCAAAATGAAAGTCTTACAGTTTTTTGCCAGCATT
AATAAGACTCATCCCAGAGCCTACCCTGAAAAGTATGCAGAGGCTTTGCAAGATGAGATAGACAGGACCA
AGGCCTGGATCTTGAACAGATGCTCCAACTCCTCTGACCTGCTCACATTCTAG

Translation (320 aa):
MADSHNTQYCSLQESAQAQQELDNDQETMETSEEEEDTTTSNKVYGSGIPSPPQSPQRAYSPCVALASIP
DSPSEEASIKGSGGLEDPLYLLHNAQNTKVYDLVDFLVLNYQMKAFTTKAEMLESIGREYEEYYPLIFSE
ASECLKMVFGLDMVEVDPSVHSYILVTALGITYDGMMTDVLGMPKTGILIAVLSVIFMKGNYVSEEIIWE
MVNNIGLCGGRDPYIHKDPRKLISEEFVQEGCLKYRQVPNSDPPSYGFLWGPRAFAETSKMKVLQFFASI
NKTHPRAYPEKYAEALQDEIDRTKAWILNRCSNSSDLLTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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