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Report for CCDS30508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30508.1 Public Mus musculus X Reps2 23 108 98 CCDS HistoryNCBI Gene:194590Re-query CCDS DB by CCDS ID:30508.1Re-query CCDS DB by GeneID:194590See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101102.1 ENSMUSP00000098661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101102.1Link to Ensembl Protein Viewer:ENSMUSP00000098661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101102Re-query CCDS DB by Protein ID:ENSMUSP00000098661
Original member NCBI NM_178256.4 NP_839987.2 Updated not alive Link to Nucleotide Sequence:NM_178256.4Link to Protein Sequence:NP_839987.2Re-query CCDS DB by Nucleotide ID:NM_178256Re-query CCDS DB by Protein ID:NP_839987
Current member NCBI NM_178256.5 NP_839987.2 Accepted alive Link to Nucleotide Sequence:NM_178256.5Link to Protein Sequence:NP_839987.2Re-query CCDS DB by Nucleotide ID:NM_178256Re-query CCDS DB by Protein ID:NP_839987Link to BLAST:NP_839987.2

Chromosomal Locations for CCDS 30508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 162417543 162417611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162427653 162427758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162438648 162438793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162441037 162441120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162471795 162471856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162503771 162503907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162507607 162507652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162512679 162512732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162514279 162514351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162518329 162518423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162520121 162520263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162522922 162522985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162526258 162526396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162546755 162546849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162552543 162552669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162554797 162554945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162565228 162565351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162643274 162643507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGAAGTGGCAGCGGGCGGAGGCTGCGGCGCCGGGCCGCCTTTGCTGCTGAGCGATAGCGAGCAGCAGT
GCTACTCTGAGCTCTTCGCGCGCTGTGCGGGCGCTGCAAGCGGGGGCCCCGGACCTGGTCCCCCCGAGGC
TACCAGGGTCGCCCCCGGCACTGCCACTGCGGCCGCTGGTCCAGTAGCTGATCTGTTTCGAGCGTCGCAG
CTGCCACCAGAGACATTGCACCAGATCACAGAACTGTGTGGTGCAAAGCGGGTTGGTTATTTTGGCCCAA
CACAGTTTTATGTTGCCCTGAAATTGATTGCTGCAGCACAGGCTGGCCTCCCTGTGAGAACAGAGAGTAT
TAAATGTGAACTGCCTCTGCCTCGCTTTGTGATGTCGAAGAATGATGGTGAGATACGGTTTGGGAACCCA
GCTGAGCTGCATGGACCGAAGGTTCAGATTCCATACTTAACCACAGAGAAAAATTCCTTCAAAAGAATGG
ACAATGAGGATAAGCAGCAGGAAACACAGTCTCCCACGATGTCACCCCTCGCCTCCCCTCCTTCTTCCCC
GCCTCATTACCAGAGGGTGTCCTTGAGCCATGGCTACAGCAAACTGCGGAGCGGCACAGAACAGATGCAT
CCAGCTCCATATGAAAGGCAGCCCATTGGCCAGCCTGAAGGACCCTCATCAGAGGGTCCAGGAGCCAAAC
CCTTTCGTCGGCAGGCATCTCTTATTCGGTCCTTTTCAGTGGAGAGAGAACCGCAGGAGAACAACAGTAA
TTACCCAGATGAGCCCTGGAGGATAACTGAAGAACAGCGGGAGTACTACGTCAATCAGTTTCGGTCCCTC
CAGCCAGACCCGAGTTCCTTCATTTCAGGGTCTGTGGCCAAGAACTTCTTCACCAAATCAAAGCTCTCCA
TTCCAGAACTCTCTTATATCTGGGAACTCAGTGATGCTGACTGTGATGGAGCCCTGACCTTGTCCGAGTT
TTGTGCTGCATTCCATCTCATCGTAGCCCGGAAGAACGGCTACCCACTGCCAGAGGGCCTGCCTCCAACT
CTGCAGCCAGAGTACTTGCAAGCAGCTTTCCCTAAATCCAAGTGGGAGTGTGCAATTTTTGATTCTTATT
CTGAGTCAATGCCAGCAAACCAACAGTCCTGTGACTTGAATCGGATGGAGAAGACATCTGTTAAAGACGT
GGCTGACTTCCCTGTCCCTACCCAAGATGTGACTACTGCTGATGACAAACAAGCTTTGAAAAGTACTGTT
AACGAATCCTTACCAAAGGACGTATCTGAGGATACAGCAACTTCTAAGGACTACAACAGTCTCAAAGCAA
GACCAAGATCCAGATCTTACTCTAGCACCTCCATAGAAGAGGCCATGAAAAGGGGTGAGGACCCTCCCAC
CCCACCACCACGGCCACAGAAAACCCATTCCAGAGCCTCCTCCTTGGATCTGAATAAAGTCTTCCTGCCC
AGTGCGCCAGCTGCTAACTCAGGATTGTTACCCCCACCACCGGCACTTCCTCCGAGACCGTGTCCAACAC
AGTCTGAACCAGTGTCTGAAGCTGATTTACACTCTCAGCTGAACAGAGCTCCTTCCCAAGCTGCAGAAAG
CAGTCCAACAAAGATGGATGCACCACATGCTCAGCCTCCATCAAAGCCTATTCGCAGGAAATTCCGACCT
GAAAATCAAACAACAGAAAGCCAAGAGCCTGCTGCTGCAGTTGGAGGGGCAGTTTCTGCAGCAATGGTGA
AGCCCCATCCAACAGTACAAAAGCAGTCTTCCAAGCAGAAGAAGGCTATTCAGACTGCCATTCGCAAAAA
TAAGGAGGCCAATGCAGTGCTGGCCCGATTGAACAGTGAGCTGCAGCAGCAGCTGAAGGAAGTTCATCAA
GAACGGATCGCATTGGAAAACCAATTGGAACAACTTCGCCCAGTCACAGTGTTGTGA

Translation (648 aa):
MEVAAGGGCGAGPPLLLSDSEQQCYSELFARCAGAASGGPGPGPPEATRVAPGTATAAAGPVADLFRASQ
LPPETLHQITELCGAKRVGYFGPTQFYVALKLIAAAQAGLPVRTESIKCELPLPRFVMSKNDGEIRFGNP
AELHGPKVQIPYLTTEKNSFKRMDNEDKQQETQSPTMSPLASPPSSPPHYQRVSLSHGYSKLRSGTEQMH
PAPYERQPIGQPEGPSSEGPGAKPFRRQASLIRSFSVEREPQENNSNYPDEPWRITEEQREYYVNQFRSL
QPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLSEFCAAFHLIVARKNGYPLPEGLPPT
LQPEYLQAAFPKSKWECAIFDSYSESMPANQQSCDLNRMEKTSVKDVADFPVPTQDVTTADDKQALKSTV
NESLPKDVSEDTATSKDYNSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFLP
SAPAANSGLLPPPPALPPRPCPTQSEPVSEADLHSQLNRAPSQAAESSPTKMDAPHAQPPSKPIRRKFRP
ENQTTESQEPAAAVGGAVSAAMVKPHPTVQKQSSKQKKAIQTAIRKNKEANAVLARLNSELQQQLKEVHQ
ERIALENQLEQLRPVTVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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