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Report for CCDS30514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30514.1 Public Mus musculus X Ap1s2 23 108 98 CCDS HistoryNCBI Gene:108012Re-query CCDS DB by CCDS ID:30514.1Re-query CCDS DB by GeneID:108012See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112294.8 ENSMUSP00000107913.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112294.8Link to Ensembl Protein Viewer:ENSMUSP00000107913.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112294Re-query CCDS DB by Protein ID:ENSMUSP00000107913
Original member Current member NCBI NM_026887.3 NP_081163.2 Accepted alive Link to Nucleotide Sequence:NM_026887.3Link to Protein Sequence:NP_081163.2Re-query CCDS DB by Nucleotide ID:NM_026887Re-query CCDS DB by Protein ID:NP_081163Link to BLAST:NP_081163.2

Chromosomal Locations for CCDS 30514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 163911329 163911507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 163916475 163916583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 163917706 163917843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 163926903 163926959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGCAGTTTATGTTGCTTTTTAGTCGCCAGGGAAAGCTTCGACTGCAGAAATGGTATGTCCCACTGTCAG
ACAAAGAAAAGAAGAAGATCACAAGAGAACTTGTTCAAACCGTTTTAGCACGGAAACCCAAGATGTGCAG
CTTCCTTGAGTGGAGAGATCTGAAGATTGTTTATAAAAGATATGCCAGTCTATATTTTTGCTGTGCTATT
GAGGATCAGGACAATGAACTGATTACCCTGGAAATAATCCATCGTTACGTGGAATTACTTGACAAGTATT
TTGGCAGTGTATGTGAACTTGATATCATCTTTAATTTTGAGAAGGCCTATTTTATTTTGGATGAATTTCT
CTTGGGAGGAGAAGTTCAGGAAACATCCAAGAAAAATGTCCTTAAAGCAATTGAGCAGGCCGATCTCCTG
CAGGAGAAAACAGAGACTATGTATCACAGCAAGAGTTTCATTGGGTATAAGAAAGCGTACTAG

Translation (160 aa):
MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAI
EDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLL
QEKTETMYHSKSFIGYKKAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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