NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31131.1 Public Homo sapiens 10 LARP4B 24 110 108 CCDS HistoryNCBI Gene:23185Re-query CCDS DB by CCDS ID:31131.1Re-query CCDS DB by GeneID:23185See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31131.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316157.8 ENSP00000326128.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316157.8Link to Ensembl Protein Viewer:ENSP00000326128.3Re-query CCDS DB by Nucleotide ID:ENST00000316157Re-query CCDS DB by Protein ID:ENSP00000326128
Original member Current member NCBI NM_015155.3 NP_055970.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015155.3Link to Protein Sequence:NP_055970.1Re-query CCDS DB by Nucleotide ID:NM_015155Re-query CCDS DB by Protein ID:NP_055970Link to BLAST:NP_055970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055970.1 738 Q92615 738 100% 0 0

Chromosomal Locations for CCDS 31131.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 812926 813213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 814742 814850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 814946 815070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 817725 817889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 820800 820845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 825065 825316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 825764 825870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 829385 829594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 829681 829734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 830867 830977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 836403 836506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 842932 843068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 844977 845055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 863743 863883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 864123 864270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 884447 884506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 885641 885721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2217 nt):
ATGACTTCTGATCAGGACGCTAAGGTTGTGGCTGAACCGCAGACGCAGAGAGTCCAGGAGGGCAAGGACA
GCGCTCATCTGATGAATGGTCCTATATCTCAAACCACTTCTCAGACAAGTTCCATCCCACCTTTGAGTCA
GGTACCAGCAACTAAGGTTTCAGAGCTGAACCCTAATGCAGAAGTGTGGGGGGCTCCTGTGTTACATCTG
GAAGCAAGCAGTGCTGCTGACGGTGTGAGTGCTGCATGGGAGGAGGTGGCTGGCCACCACGCAGACCGTG
GCCCGCAGGGATCGGATGCCAATGGTGATGGTGACCAGGGCCATGAGAATGCCGCATTGCCAGACCCGCA
GGAGTCGGACCCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTCTGCCTGAAAAT
AGCGAGACAGGAGGAAATGAGTCTCAACCAGACAGCCAGGAAGACCCCCGAGAAGTACTTAAAAAAACAT
TGGAATTCTGCTTATCTAGGGAGAACCTTGCTAGTGACATGTATCTTATATCACAGATGGATAGTGACCA
GTATGTGCCAATCACAACGGTGGCTAACCTCGACCACATCAAGAAGCTCAGCACTGATGTGGACTTGATT
GTGGAAGTGCTAAGATCTTTACCTTTAGTCCAAGTGGATGAAAAGGGAGAAAAAGTAAGGCCAAATCAAA
ATCGCTGCATAGTAATATTGCGTGAAATATCTGAATCTACCCCCGTGGAAGAAGTAGAAGCACTATTTAA
AGGAGATAATTTACCAAAATTTATAAACTGTGAATTTGCATATAATGATAATTGGTTTATTACATTTGAA
ACAGAAGCTGATGCACAACAGGCTTACAAATACCTTCGAGAAGAAGTCAAAACTTTTCAAGGAAAACCAA
TTAAGGCACGGATAAAAGCAAAGGCAATAGCTATAAACACATTTTTGCCAAAGAATGGATTTAGACCCCT
GGACGTGAGCCTGTATGCCCAGCAGCGCTACGCGACGTCGTTCTACTTCCCTCCCATGTACAGCCCCCAG
CAGCAGTTCCCCCTGTACAGCCTGATCACTCCCCAGACGTGGTCAGCAACGCACAGCTATCTTGACCCAC
CCTTGGTAACTCCATTTCCAAATACTGGATTTATAAATGGGTTTACGTCTCCAGCGTTCAAGCCTGCGGC
GTCTCCTCTGACTTCTCTCAGACAGTATCCTCCTCGAAGCAGGAATCCTAGTAAATCTCATCTGCGGCAT
GCGATTCCTAGTGCAGAGAGGGGACCTGGGTTATTAGAAAGTCCTTCAATATTTAACTTCACTGCAGATC
GATTAATTAATGGTGTCCGGAGTCCACAAACAAGGCAAGCAGGTCAAACTAGAACACGGATTCAAAACCC
TTCAGCATATGCCAAGAGAGAGGCTGGGCCTGGGCGTGTGGAGCCAGGCAGTCTCGAATCCTCTCCTGGT
TTAGGGAGGGGAAGGAAGAATTCCTTTGGCTACCGGAAGAAAAGGGAGGAGAAGTTTACAAGCAGCCAGA
CACAGTCTCCAACGCCACCAAAGCCTCCGTCGCCAAGCTTCGAGCTGGGGCTGTCCAGCTTCCCTCCATT
ACCTGGAGCTGCCGGCAATTTGAAGACAGAGGACTTGTTTGAAAACAGGCTATCTAGCTTGATAATAGGA
CCATCCAAAGAAAGGACCCTCAGTGCAGACGCAAGCGTGAACACCCTTCCTGTAGTGGTCTCCAGAGAGC
CCTCGGTGCCGGCTTCTTGTGCTGTATCAGCAACGTACGAGCGATCCCCCTCCCCAGCTCATTTACCCGA
TGATCCCAAGGTGGCGGAGAAACAGAGGGAAACCCACAGTGTGGACAGACTTCCTTCCGCCCTCACTGCG
ACCGCGTGTAAATCGGTGCAGGTGAACGGAGCCGCCACGGAATTGCGAAAGCCCAGCTACGCAGAGATTT
GTCAGAGAACGAGTAAAGAGCCTCCTTCTTCCCCATTGCAACCCCAAAAAGAACAAAAGCCAAACACTGT
TGGTTGTGGGAAGGAGGAAAAGAAGCTGGCAGAGCCCGCAGAGAGATACCGGGAGCCCCCAGCCCTCAAG
TCCACACCTGGAGCCCCCAGAGACCAGAGGCGGCCGGCGGGGGGCCGGCCCTCGCCCTCGGCCATGGGGA
AGCGTCTCAGCCGAGAGCAGAGCACTCCCCCCAAGTCTCCTCAGTGA

Translation (738 aa):
MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNAEVWGAPVLHL
EASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPEN
SETGGNESQPDSQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLI
VEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFE
TEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQQRYATSFYFPPMYSPQ
QQFPLYSLITPQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRH
AIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPG
LGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIG
PSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPSALTA
TACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALK
STPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH