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Report for CCDS31356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31356.1 Public Homo sapiens 11 TRIM68 24 110 108 CCDS HistoryNCBI Gene:55128Re-query CCDS DB by CCDS ID:31356.1Re-query CCDS DB by GeneID:55128See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31356.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300747.10 ENSP00000300747.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300747.10Link to Ensembl Protein Viewer:ENSP00000300747.5Re-query CCDS DB by Nucleotide ID:ENST00000300747Re-query CCDS DB by Protein ID:ENSP00000300747
Original member Current member NCBI NM_018073.8 NP_060543.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018073.8Link to Protein Sequence:NP_060543.5Re-query CCDS DB by Nucleotide ID:NM_018073Re-query CCDS DB by Protein ID:NP_060543Link to BLAST:NP_060543.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060543.5 485 Q6AZZ1-1 485 100% 0 0

Chromosomal Locations for CCDS 31356.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4600276 4600826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4601027 4601127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4601664 4601686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4602152 4602412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4603245 4603340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4605079 4605504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGATCCCACAGCCTTGGTGGAAGCCATTGTGGAAGAAGTGGCCTGTCCCATCTGTATGACCTTCCTGA
GGGAGCCCATGAGCATTGACTGTGGCCACAGCTTCTGCCACAGCTGTCTCTCTGGACTCTGGGAGATCCC
AGGAGAATCCCAGAACTGGGGTTACACCTGTCCCCTCTGTCGAGCTCCTGTCCAGCCAAGGAACCTGCGG
CCTAATTGGCAGCTGGCCAATGTTGTAGAAAAAGTCCGTCTGCTAAGGCTACATCCAGGAATGGGGCTGA
AGGGTGACCTGTGTGAGCGCCATGGGGAAAAGCTGAAGATGTTCTGCAAAGAGGATGTCTTGATAATGTG
TGAGGCCTGCAGCCAGTCCCCAGAGCATGAGGCCCACAGTGTTGTGCCAATGGAGGATGTTGCCTGGGAG
TACAAGTGGGAACTTCATGAGGCCCTCGAACATCTGAAGAAAGAGCAAGAAGAGGCCTGGAAGCTTGAAG
TTGGTGAAAGGAAACGAACTGCCACCTGGAAGATACAGGTGGAAACCCGAAAACAGAGTATTGTATGGGA
GTTTGAAAAATACCAGCGATTACTAGAGAAAAAGCAGCCACCACATCGGCAGCTGGGGGCAGAGGTAGCA
GCAGCTCTGGCCAGCCTACAGCGGGAGGCAGCGGAGACCATGCAGAAACTGGAGTTGAACCATAGCGAGC
TCATCCAGCAGAGCCAGGTCCTGTGGAGGATGATTGCAGAGTTGAAAGAGAGGTCGCAGAGGCCTGTCCG
CTGGATGTTGCAGGATATTCAGGAAGTGTTAAACAGGAGCAAATCTTGGAGCTTGCAGCAGCCAGAACCA
ATCTCCCTGGAGTTGAAGACAGATTGCCGTGTGCTGGGGCTAAGAGAGATCCTGAAGACTTATGCAGCTG
ATGTGCGCTTGGATCCAGATACTGCTTACTCCCGTCTCATCGTGTCTGAGGACAGAAAACGTGTGCACTA
TGGAGACACCAACCAGAAACTGCCAGACAATCCTGAGAGATTTTACCGCTATAATATCGTCCTGGGAAGC
CAGTGCATCTCCTCAGGCCGGCACTACTGGGAGGTGGAGGTGGGAGACAGGTCTGAGTGGGGCCTGGGAG
TATGTAAGCAAAATGTAGACCGGAAGGAGGTGGTCTACTTATCCCCCCACTATGGATTCTGGGTGATAAG
GCTGAGGAAGGGAAATGAGTACCGAGCAGGCACCGATGAGTACCCAATCCTGTCCTTGCCGGTCCCTCCT
CGCCGGGTGGGAATCTTCGTGGATTATGAGGCCCATGACATTTCTTTCTACAATGTGACTGACTGTGGCT
CCCACATCTTCACTTTCCCCCGCTATCCCTTCCCTGGGCGCCTCCTGCCCTATTTTAGTCCTTGCTACAG
CATTGGAACCAACAACACTGCTCCTCTGGCCATCTGCTCCCTGGATGGGGAGGACTAA

Translation (485 aa):
MDPTALVEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLCRAPVQPRNLR
PNWQLANVVEKVRLLRLHPGMGLKGDLCERHGEKLKMFCKEDVLIMCEACSQSPEHEAHSVVPMEDVAWE
YKWELHEALEHLKKEQEEAWKLEVGERKRTATWKIQVETRKQSIVWEFEKYQRLLEKKQPPHRQLGAEVA
AALASLQREAAETMQKLELNHSELIQQSQVLWRMIAELKERSQRPVRWMLQDIQEVLNRSKSWSLQQPEP
ISLELKTDCRVLGLREILKTYAADVRLDPDTAYSRLIVSEDRKRVHYGDTNQKLPDNPERFYRYNIVLGS
QCISSGRHYWEVEVGDRSEWGLGVCKQNVDRKEVVYLSPHYGFWVIRLRKGNEYRAGTDEYPILSLPVPP
RRVGIFVDYEAHDISFYNVTDCGSHIFTFPRYPFPGRLLPYFSPCYSIGTNNTAPLAICSLDGED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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