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Report for CCDS3144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3144.1 Public Homo sapiens 3 WWTR1 24 110 108 CCDS HistoryNCBI Gene:25937Re-query CCDS DB by CCDS ID:3144.1Re-query CCDS DB by GeneID:25937See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3144.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360632.8 ENSP00000353847.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360632.8Link to Ensembl Protein Viewer:ENSP00000353847.3Re-query CCDS DB by Nucleotide ID:ENST00000360632Re-query CCDS DB by Protein ID:ENSP00000353847
Original member Current member EBI ENST00000467467.5 ENSP00000419234.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000467467.5Link to Ensembl Protein Viewer:ENSP00000419234.1Re-query CCDS DB by Nucleotide ID:ENST00000467467Re-query CCDS DB by Protein ID:ENSP00000419234
Original member Current member EBI ENST00000465804.5 ENSP00000419465.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465804.5Link to Ensembl Protein Viewer:ENSP00000419465.1Re-query CCDS DB by Nucleotide ID:ENST00000465804Re-query CCDS DB by Protein ID:ENSP00000419465
Original member Current member NCBI NM_001168278.3 NP_001161750.1 Accepted alive Link to Nucleotide Sequence:NM_001168278.3Link to Protein Sequence:NP_001161750.1Re-query CCDS DB by Nucleotide ID:NM_001168278Re-query CCDS DB by Protein ID:NP_001161750Link to BLAST:NP_001161750.1
Original member Current member NCBI NM_001168280.3 NP_001161752.1 Accepted alive Link to Nucleotide Sequence:NM_001168280.3Link to Protein Sequence:NP_001161752.1Re-query CCDS DB by Nucleotide ID:NM_001168280Re-query CCDS DB by Protein ID:NP_001161752Link to BLAST:NP_001161752.1
Original member Current member NCBI NM_001348362.2 NP_001335291.1 Accepted alive Link to Nucleotide Sequence:NM_001348362.2Link to Protein Sequence:NP_001335291.1Re-query CCDS DB by Nucleotide ID:NM_001348362Re-query CCDS DB by Protein ID:NP_001335291Link to BLAST:NP_001335291.1
Original member Current member NCBI NM_015472.6 NP_056287.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015472.6Link to Protein Sequence:NP_056287.1Re-query CCDS DB by Nucleotide ID:NM_015472Re-query CCDS DB by Protein ID:NP_056287Link to BLAST:NP_056287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161750.1 400 Q9GZV5 400 100% 0 0
NP_001161752.1 400 Q9GZV5 400 100% 0 0
NP_001335291.1 400 Q9GZV5 400 100% 0 0
NP_056287.1 400 Q9GZV5 400 100% 0 0

Chromosomal Locations for CCDS 3144.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149520805 149520989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149526013 149526125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149527836 149527969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149542335 149542537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149572864 149573000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149656876 149657306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAATCCGGCCTCGGCGCCCCCTCCGCTCCCGCCGCCTGGGCAGCAAGTGATCCACGTCACGCAGGACC
TAGACACAGACCTCGAAGCCCTCTTCAACTCTGTCATGAATCCGAAGCCTAGCTCGTGGCGGAAGAAGAT
CCTGCCGGAGTCTTTCTTTAAGGAGCCTGATTCGGGCTCGCACTCGCGCCAGTCCAGCACCGACTCGTCG
GGCGGCCACCCGGGGCCTCGACTGGCTGGGGGTGCCCAGCATGTCCGCTCGCACTCGTCGCCCGCGTCCC
TGCAGCTGGGCACCGGCGCGGGTGCTGCGGGTAGCCCCGCGCAGCAGCACGCGCACCTCCGCCAGCAGTC
CTACGACGTGACCGACGAGCTGCCACTGCCCCCGGGCTGGGAGATGACCTTCACGGCCACTGGCCAGAGG
TACTTCCTCAATCACATAGAAAAAATCACCACATGGCAAGACCCTAGGAAGGCGATGAATCAGCCTCTGA
ATCATATGAACCTCCACCCTGCCGTCAGTTCCACACCAGTGCCTCAGAGGTCCATGGCAGTATCCCAGCC
AAATCTCGTGATGAATCACCAACACCAGCAGCAGATGGCCCCCAGTACCCTGAGCCAGCAGAACCACCCC
ACTCAGAACCCACCCGCAGGGCTCATGAGTATGCCCAATGCGCTGACCACTCAGCAGCAGCAGCAGCAGA
AACTGCGGCTTCAGAGAATCCAGATGGAGAGAGAAAGGATTCGAATGCGCCAAGAGGAGCTCATGAGGCA
GGAAGCTGCCCTCTGTCGACAGCTCCCCATGGAAGCTGAGACTCTTGCCCCAGTTCAGGCTGCTGTCAAC
CCACCCACGATGACCCCAGACATGAGATCCATCACTAATAATAGCTCAGATCCTTTCCTCAATGGAGGGC
CATATCATTCGAGGGAGCAGAGCACTGACAGTGGCCTGGGGTTAGGGTGCTACAGTGTCCCCACAACTCC
GGAGGACTTCCTCAGCAATGTGGATGAGATGGATACAGGAGAAAACGCAGGACAAACACCCATGAACATC
AATCCCCAACAGACCCGTTTCCCTGATTTCCTTGACTGTCTTCCAGGAACAAACGTTGACTTAGGAACTT
TGGAATCTGAAGACCTGATCCCCCTCTTCAATGATGTAGAGTCTGCTCTGAACAAAAGTGAGCCCTTTCT
AACCTGGCTGTAA

Translation (400 aa):
MNPASAPPPLPPPGQQVIHVTQDLDTDLEALFNSVMNPKPSSWRKKILPESFFKEPDSGSHSRQSSTDSS
GGHPGPRLAGGAQHVRSHSSPASLQLGTGAGAAGSPAQQHAHLRQQSYDVTDELPLPPGWEMTFTATGQR
YFLNHIEKITTWQDPRKAMNQPLNHMNLHPAVSSTPVPQRSMAVSQPNLVMNHQHQQQMAPSTLSQQNHP
TQNPPAGLMSMPNALTTQQQQQQKLRLQRIQMERERIRMRQEELMRQEAALCRQLPMEAETLAPVQAAVN
PPTMTPDMRSITNNSSDPFLNGGPYHSREQSTDSGLGLGCYSVPTTPEDFLSNVDEMDTGENAGQTPMNI
NPQQTRFPDFLDCLPGTNVDLGTLESEDLIPLFNDVESALNKSEPFLTWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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