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Report for CCDS31473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31473.1 Public Homo sapiens 11 LARGE2 24 110 108 CCDS HistoryNCBI Gene:120071Re-query CCDS DB by CCDS ID:31473.1Re-query CCDS DB by GeneID:120071See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325468.9 ENSP00000324570.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000325468.9Link to Ensembl Protein Viewer:ENSP00000324570.5Re-query CCDS DB by Nucleotide ID:ENST00000325468Re-query CCDS DB by Protein ID:ENSP00000324570
Original member Current member EBI ENST00000401752.6 ENSP00000385235.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401752.6Link to Ensembl Protein Viewer:ENSP00000385235.1Re-query CCDS DB by Nucleotide ID:ENST00000401752Re-query CCDS DB by Protein ID:ENSP00000385235
Original member Current member EBI ENST00000531526.5 ENSP00000432869.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531526.5Link to Ensembl Protein Viewer:ENSP00000432869.1Re-query CCDS DB by Nucleotide ID:ENST00000531526Re-query CCDS DB by Protein ID:ENSP00000432869
Original member Current member NCBI NM_001300721.2 NP_001287650.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001300721.2Link to Protein Sequence:NP_001287650.1Re-query CCDS DB by Nucleotide ID:NM_001300721Re-query CCDS DB by Protein ID:NP_001287650Link to BLAST:NP_001287650.1
Original member Current member NCBI NM_152312.5 NP_689525.3 Accepted alive Link to Nucleotide Sequence:NM_152312.5Link to Protein Sequence:NP_689525.3Re-query CCDS DB by Nucleotide ID:NM_152312Re-query CCDS DB by Protein ID:NP_689525Link to BLAST:NP_689525.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287650.1 721 Q8N3Y3 721 100% 0 0
NP_689525.3 721 Q8N3Y3 721 100% 0 0

Chromosomal Locations for CCDS 31473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45922883 45923167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45923473 45923555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45924154 45924277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45924506 45924677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45924785 45924889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45926039 45926151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45926222 45926347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45926442 45926597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45926711 45926871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45927315 45927593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45927920 45928069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45928177 45928372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45928630 45928845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGCTGCCCCGAGGGCGCCCCCGGGCGCTGGGGGCCGCCGCGCTGTTGCTGCTGCTGCTGCTGCTCGGAT
TCCTCCTGTTCGGTGGGGACCTGGGGTGTGAGCGCCGCGAGCCTGGCGGGCGAGCGGGGGCCCCGGGATG
CTTCCCCGGCCCGCTCATGCCACGTGTCCCCCCAGACGGGAGGCTGCGGAGAGCCGCCGCCCTCGACGGA
GACCCGGGGGCCGGCCCCGGGGACCACAACCGCTCCGACTGCGGCCCGCAGCCGCCGCCGCCGCCCAAGT
GCGAGCTCTTGCATGTGGCCATCGTGTGTGCGGGGCATAACTCCAGCCGAGACGTCATCACCCTGGTGAA
GTCCATGCTCTTCTACAGGAAAAATCCACTGCACCTCCACTTGGTGACTGACGCCGTGGCCAGAAACATC
CTGGAGACGCTCTTCCACACATGGATGGTGCCTGCTGTCCGTGTCAGCTTTTATCATGCCGACCAGCTCA
AGCCCCAGGTCTCCTGGATCCCCAACAAGCACTACTCCGGCCTCTATGGGCTAATGAAGCTGGTGCTGCC
CAGTGCCTTGCCTGCTGAGCTGGCCCGCGTCATTGTCCTGGACACGGATGTCACCTTCGCCTCTGACATC
TCGGAGCTCTGGGCCCTCTTTGCTCACTTTTCTGACACGCAGGCGATCGGTCTTGTGGAGAACCAGAGTG
ACTGGTACCTGGGCAACCTCTGGAAGAACCACAGGCCCTGGCCTGCCTTGGGCCGGGGATTTAACACAGG
TGTGATCCTGCTGCGGCTGGACCGGCTCCGGCAGGCTGGCTGGGAGCAGATGTGGAGGCTGACAGCCAGG
CGGGAGCTCCTTAGCCTGCCTGCCACCTCACTGGCTGACCAGGACATCTTCAACGCTGTGATCAAGGAGC
ACCCGGGGCTAGTGCAGCGTCTGCCTTGTGTCTGGAATGTGCAGCTGTCAGATCACACACTGGCCGAGCG
CTGCTACTCTGAGGCGTCTGACCTCAAGGTGATCCACTGGAACTCACCAAAGAAGCTTCGGGTGAAGAAC
AAGCATGTGGAATTCTTCCGCAATTTCTACCTGACCTTCCTGGAGTACGATGGGAACCTGCTGCGGAGAG
AGCTCTTTGTGTGCCCCAGCCAGCCCCCACCTGGTGCTGAGCAGTTGCAGCAGGCCCTGGCACAACTGGA
CGAGGAAGACCCCTGCTTTGAGTTCCGGCAGCAGCAGCTCACTGTGCACCGTGTGCATGTCACTTTCCTG
CCCCATGAACCGCCACCCCCCCGGCCTCACGATGTCACCCTTGTGGCCCAGCTGTCCATGGACCGGCTGC
AGATGTTGGAAGCCCTGTGCAGGCACTGGCCTGGCCCCATGAGCCTGGCCTTGTACCTGACAGACGCAGA
AGCTCAGCAGTTCCTGCATTTCGTCGAGGCCTCACCAGTGCTTGCTGCCCGGCAGGACGTGGCCTACCAT
GTGGTGTACCGTGAGGGGCCCCTATACCCCGTCAACCAGCTTCGCAACGTGGCCTTGGCCCAGGCCCTCA
CGCCTTACGTCTTCCTCAGTGACATTGACTTCCTGCCTGCCTATTCTCTCTACGACTACCTCAGGGCCTC
CATTGAGCAGCTGGGGCTGGGCAGCCGGCGCAAGGCAGCACTGGTGGTGCCGGCATTCGAGACCCTGCGC
TACCGCTTCAGCTTCCCCCATTCCAAGGTGGAGCTGTTGGCCTTGCTGGATGCGGGCACTCTCTACACCT
TCAGGTACCACGAGTGGCCCCGAGGCCACGCACCCACAGACTATGCCCGCTGGCGGGAGGCTCAGGCCCC
GTACCGTGTGCAATGGGCGGCCAACTATGAACCCTACGTGGTGGTGCCACGAGACTGTCCCCGCTATGAT
CCTCGCTTTGTGGGCTTCGGCTGGAACAAAGTGGCCCACATTGTGGAGCTGGATGCCCAGGAATATGAGC
TCCTGGTGCTGCCCGAGGCCTTCACCATCCATCTGCCCCACGCTCCAAGCCTGGACATCTCCCGCTTCCG
CTCCAGCCCCACCTATCGTGACTGCCTCCAGGCCCTCAAGGACGAATTCCACCAGGACTTGTCCCGCCAC
CATGGGGCTGCTGCCCTCAAATACCTCCCAGCCCTGCAGCAGCCCCAGAGCCCTGCCCGAGGCTGA

Translation (721 aa):
MLPRGRPRALGAAALLLLLLLLGFLLFGGDLGCERREPGGRAGAPGCFPGPLMPRVPPDGRLRRAAALDG
DPGAGPGDHNRSDCGPQPPPPPKCELLHVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNI
LETLFHTWMVPAVRVSFYHADQLKPQVSWIPNKHYSGLYGLMKLVLPSALPAELARVIVLDTDVTFASDI
SELWALFAHFSDTQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLRLDRLRQAGWEQMWRLTAR
RELLSLPATSLADQDIFNAVIKEHPGLVQRLPCVWNVQLSDHTLAERCYSEASDLKVIHWNSPKKLRVKN
KHVEFFRNFYLTFLEYDGNLLRRELFVCPSQPPPGAEQLQQALAQLDEEDPCFEFRQQQLTVHRVHVTFL
PHEPPPPRPHDVTLVAQLSMDRLQMLEALCRHWPGPMSLALYLTDAEAQQFLHFVEASPVLAARQDVAYH
VVYREGPLYPVNQLRNVALAQALTPYVFLSDIDFLPAYSLYDYLRASIEQLGLGSRRKAALVVPAFETLR
YRFSFPHSKVELLALLDAGTLYTFRYHEWPRGHAPTDYARWREAQAPYRVQWAANYEPYVVVPRDCPRYD
PRFVGFGWNKVAHIVELDAQEYELLVLPEAFTIHLPHAPSLDISRFRSSPTYRDCLQALKDEFHQDLSRH
HGAAALKYLPALQQPQSPARG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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