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Report for CCDS31853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31853.1 Public Homo sapiens 12 MSRB3 24 110 108 CCDS HistoryNCBI Gene:253827Re-query CCDS DB by CCDS ID:31853.1Re-query CCDS DB by GeneID:253827See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308259.10 ENSP00000312274.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308259.10Link to Ensembl Protein Viewer:ENSP00000312274.6Re-query CCDS DB by Nucleotide ID:ENST00000308259Re-query CCDS DB by Protein ID:ENSP00000312274
Original member Current member EBI ENST00000535664.5 ENSP00000441650.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535664.5Link to Ensembl Protein Viewer:ENSP00000441650.1Re-query CCDS DB by Nucleotide ID:ENST00000535664Re-query CCDS DB by Protein ID:ENSP00000441650
Original member Current member EBI ENST00000614640.4 ENSP00000481483.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614640.4Link to Ensembl Protein Viewer:ENSP00000481483.1Re-query CCDS DB by Nucleotide ID:ENST00000614640Re-query CCDS DB by Protein ID:ENSP00000481483
Original member Current member EBI ENST00000642411.1 ENSP00000494265.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642411.1Link to Ensembl Protein Viewer:ENSP00000494265.1Re-query CCDS DB by Nucleotide ID:ENST00000642411Re-query CCDS DB by Protein ID:ENSP00000494265
Original member Current member EBI ENST00000646299.1 ENSP00000494941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646299.1Link to Ensembl Protein Viewer:ENSP00000494941.1Re-query CCDS DB by Nucleotide ID:ENST00000646299Re-query CCDS DB by Protein ID:ENSP00000494941
Original member Current member EBI ENST00000642404.1 ENSP00000496008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642404.1Link to Ensembl Protein Viewer:ENSP00000496008.1Re-query CCDS DB by Nucleotide ID:ENST00000642404Re-query CCDS DB by Protein ID:ENSP00000496008
Original member Current member NCBI NM_001031679.3 NP_001026849.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031679.3Link to Protein Sequence:NP_001026849.1Re-query CCDS DB by Nucleotide ID:NM_001031679Re-query CCDS DB by Protein ID:NP_001026849Link to BLAST:NP_001026849.1
Original member Current member NCBI NM_001193460.2 NP_001180389.1 Accepted alive Link to Nucleotide Sequence:NM_001193460.2Link to Protein Sequence:NP_001180389.1Re-query CCDS DB by Nucleotide ID:NM_001193460Re-query CCDS DB by Protein ID:NP_001180389Link to BLAST:NP_001180389.1
Original member Current member NCBI NM_001193461.2 NP_001180390.1 Accepted alive Link to Nucleotide Sequence:NM_001193461.2Link to Protein Sequence:NP_001180390.1Re-query CCDS DB by Nucleotide ID:NM_001193461Re-query CCDS DB by Protein ID:NP_001180390Link to BLAST:NP_001180390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026849.1 185 Q8IXL7-2 185 100% 0 0
NP_001180389.1 185 Q8IXL7-2 185 100% 0 0
NP_001180390.1 185 Q8IXL7-2 185 100% 0 0

Chromosomal Locations for CCDS 31853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 65308580 65308655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65326826 65326934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65328526 65328603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65368998 65369026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65453728 65453825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65463155 65463322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGTCTGCATTCAACCTGCTGCATTTGGTGACAAAGAGCCAGCCAGTAGCCCTTCGAGCCTGTGGGCTTC
CCTCAGGGTCGTGTAGGGATAAAAAGAACTGTAAGGTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGGCT
AACACCCCTGCAGTACCATGTCACTCAGGAGAAAGGGACCGAAAGTGCCTTTGAAGGAGAATACACACAT
CACAAAGATCCTGGAATATATAAATGTGTTGTTTGTGGAACTCCATTGTTTAAGTCAGAAACCAAATTTG
ACTCCGGTTCAGGTTGGCCTTCATTCCACGATGTGATCAATTCTGAGGCAATCACATTCACAGATGACTT
TTCCTATGGGATGCACAGGGTGGAAACAAGCTGCTCTCAGTGTGGTGCTCACCTTGGGCACATTTTTGAT
GATGGGCCTCGTCCAACTGGGAAAAGATACTGCATAAATTCGGCTGCCTTGTCTTTTACACCTGCGGATA
GCAGTGGCACCGCCGAGGGAGGCAGTGGGGTCGCCAGCCCGGCCCAGGCAGACAAAGCGGAGCTCTAG

Translation (185 aa):
MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTH
HKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFD
DGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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