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Report for CCDS32212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32212.1 Public Homo sapiens 15 TGM5 24 110 108 CCDS HistoryNCBI Gene:9333Re-query CCDS DB by CCDS ID:32212.1Re-query CCDS DB by GeneID:9333See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32212.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220420.10 ENSP00000220420.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220420.10Link to Ensembl Protein Viewer:ENSP00000220420.5Re-query CCDS DB by Nucleotide ID:ENST00000220420Re-query CCDS DB by Protein ID:ENSP00000220420
Original member Current member NCBI NM_201631.4 NP_963925.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201631.4Link to Protein Sequence:NP_963925.2Re-query CCDS DB by Nucleotide ID:NM_201631Re-query CCDS DB by Protein ID:NP_963925Link to BLAST:NP_963925.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_963925.2 720 O43548-1 720 100% 0 0

Chromosomal Locations for CCDS 32212.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 43233191 43233344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43233554 43233687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43234769 43234929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43235469 43235837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43238817 43239056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43239163 43239266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43240852 43240990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43252759 43252936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43253506 43253634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43256568 43256686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43260052 43260297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43260400 43260579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43266840 43266849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGCCCAAGGGCTAGAAGTGGCCCTCACAGACCTCCAGAGCTCCAGAAATAATGTGCGGCACCACACGG
AGGAGATCACTGTGGACCACCTGCTTGTTCGCCGGGGCCAGGCCTTCAACCTCACCCTGTACTTCAGGAA
CCGGAGCTTCCAGCCAGGCCTGGACAACATCATCTTCGTGGTTGAAACTGGACCGCTGCCAGACCTGGCC
TTGGGGACTCGGGCTGTGTTCAGCCTGGCACGCCATCACAGCCCCAGCCCCTGGATTGCCTGGCTGGAGA
CCAATGGGGCCACCTCCACAGAGGTGAGCTTGTGCGCTCCTCCCACGGCGGCCGTGGGTCGGTACCTCTT
GAAAATCCACATCGACTCCTTCCAGGGGTCTGTGACGGCCTACCAGCTAGGGGAGTTCATCCTGCTTTTC
AATCCCTGGTGCCCAGAGGATGCTGTCTACTTGGACAGTGAACCCCAGAGGCAGGAGTATGTCATGAATG
ATTATGGCTTCATCTACCAAGGCAGCAAGAACTGGATCCGCCCATGTCCCTGGAACTATGGACAGTTTGA
AGACAAAATCATAGACATCTGCCTGAAGCTGCTAGACAAGAGCCTGCACTTCCAGACTGACCCAGCCACA
GACTGTGCTCTGCGGGGAAGCCCCGTCTACGTCAGCAGAGTGGTGTGTGCCATGATCAACAGCAATGATG
ATAATGGGGTGCTCAATGGAAACTGGAGTGAGAATTACACAGACGGCGCCAACCCTGCGGAGTGGACGGG
CAGCGTGGCCATCCTGAAGCAGTGGAACGCCACAGGCTGCCAGCCCGTGCGCTACGGGCAATGCTGGGTC
TTTGCTGCCGTCATGTGCACAGTGATGAGGTGTCTGGGGATCCCTACCCGTGTGATCACCAACTTCGACT
CTGGCCACGATACAGATGGAAACCTGATCATAGATGAGTATTATGACAACACAGGCAGGATTTTGGGGAA
TAAGAAGAAGGATACTATCTGGAACTTCCATGTCTGGAATGAGTGCTGGATGGCCCGGAAGGATCTGCCC
CCTGCATATGGAGGCTGGCAGGTGCTGGACGCCACACCTCAGGAGATGAGCAACGGCGTCTACTGCTGTG
GCCCTGCCTCTGTCAGAGCCATCAAAGAAGGAGAAGTGGACCTGAACTATGACACGCCCTTTGTGTTTTC
GATGGTGAATGCTGACTGCATGTCCTGGCTCGTCCAGGGAGGGAAGGAGCAGAAGCTTCACCAGGACACG
AGTTCTGTTGGCAATTTTATCAGCACAAAGAGCATCCAGAGTGACGAGCGGGATGACATCACAGAGAACT
ACAAGTATGAAGAAGGATCCCTCCAGGAGAGGCAGGTGTTTCTGAAGGCTCTGCAGAAGCTGAAGGCTAG
AAGCTTCCATGGCTCCCAAAGAGGAGCAGAGTTGCAACCTTCCAGGCCCACATCACTGAGCCAGGACAGC
CCTCGGAGCCTGCATACACCTTCCCTTCGACCCAGTGATGTGGTGCAAGTCTCCCTGAAATTCAAGCTGC
TCGACCCGCCCAACATGGGCCAGGATATATGCTTTGTCCTGCTGGCCCTCAACATGTCCTCCCAGTTCAA
GGACCTCAAAGTGAACCTGAGTGCCCAGTCTCTGCTGCACGATGGCAGCCCCCTGTCCCCATTCTGGCAG
GACACAGCGTTCATCACACTCTCTCCTAAAGAAGCAAAGACCTACCCCTGCAAAATCTCCTATTCCCAGT
ACAGCCAGTACCTGTCAACAGACAAGCTGATCCGCATCAGTGCCCTGGGTGAAGAGAAAAGCAGTCCTGA
GAAAATCCTGGTGAACAAGATCATCACCTTATCTTATCCAAGCATCACGATTAATGTTCTAGGAGCAGCC
GTTGTGAACCAGCCACTCTCCATACAGGTGATATTTTCAAACCCCCTCTCGGAGCAGGTTGAGGACTGTG
TGCTGACTGTGGAAGGAAGTGGCCTCTTCAAGAAACAGCAGAAAGTCTTCCTTGGAGTCCTCAAACCCCA
ACACCAAGCAAGCATCATTCTGGAGACCGTCCCCTTCAAGAGTGGACAAAGGCAGATCCAAGCTAATATG
AGAAGCAACAAGTTTAAGGACATTAAGGGTTACAGGAATGTTTATGTAGACTTTGCATTATAA

Translation (720 aa):
MAQGLEVALTDLQSSRNNVRHHTEEITVDHLLVRRGQAFNLTLYFRNRSFQPGLDNIIFVVETGPLPDLA
LGTRAVFSLARHHSPSPWIAWLETNGATSTEVSLCAPPTAAVGRYLLKIHIDSFQGSVTAYQLGEFILLF
NPWCPEDAVYLDSEPQRQEYVMNDYGFIYQGSKNWIRPCPWNYGQFEDKIIDICLKLLDKSLHFQTDPAT
DCALRGSPVYVSRVVCAMINSNDDNGVLNGNWSENYTDGANPAEWTGSVAILKQWNATGCQPVRYGQCWV
FAAVMCTVMRCLGIPTRVITNFDSGHDTDGNLIIDEYYDNTGRILGNKKKDTIWNFHVWNECWMARKDLP
PAYGGWQVLDATPQEMSNGVYCCGPASVRAIKEGEVDLNYDTPFVFSMVNADCMSWLVQGGKEQKLHQDT
SSVGNFISTKSIQSDERDDITENYKYEEGSLQERQVFLKALQKLKARSFHGSQRGAELQPSRPTSLSQDS
PRSLHTPSLRPSDVVQVSLKFKLLDPPNMGQDICFVLLALNMSSQFKDLKVNLSAQSLLHDGSPLSPFWQ
DTAFITLSPKEAKTYPCKISYSQYSQYLSTDKLIRISALGEEKSSPEKILVNKIITLSYPSITINVLGAA
VVNQPLSIQVIFSNPLSEQVEDCVLTVEGSGLFKKQQKVFLGVLKPQHQASIILETVPFKSGQRQIQANM
RSNKFKDIKGYRNVYVDFAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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