NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32354.1 Public Homo sapiens 16 HAGHL 24 110 108 CCDS HistoryNCBI Gene:84264Re-query CCDS DB by CCDS ID:32354.1Re-query CCDS DB by GeneID:84264See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32354.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389703.8 ENSP00000374353.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389703.8Link to Ensembl Protein Viewer:ENSP00000374353.3Re-query CCDS DB by Nucleotide ID:ENST00000389703Re-query CCDS DB by Protein ID:ENSP00000374353
Original member Current member NCBI NM_001290137.2 NP_001277066.1 Accepted alive Link to Nucleotide Sequence:NM_001290137.2Link to Protein Sequence:NP_001277066.1Re-query CCDS DB by Nucleotide ID:NM_001290137Re-query CCDS DB by Protein ID:NP_001277066Link to BLAST:NP_001277066.1
Original member Current member NCBI NM_001290139.2 NP_001277068.1 Accepted alive Link to Nucleotide Sequence:NM_001290139.2Link to Protein Sequence:NP_001277068.1Re-query CCDS DB by Nucleotide ID:NM_001290139Re-query CCDS DB by Protein ID:NP_001277068Link to BLAST:NP_001277068.1
Original member Current member NCBI NM_001323635.2 NP_001310564.1 Accepted alive Link to Nucleotide Sequence:NM_001323635.2Link to Protein Sequence:NP_001310564.1Re-query CCDS DB by Nucleotide ID:NM_001323635Re-query CCDS DB by Protein ID:NP_001310564Link to BLAST:NP_001310564.1
Original member Current member NCBI NM_032304.4 NP_115680.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032304.4Link to Protein Sequence:NP_115680.1Re-query CCDS DB by Nucleotide ID:NM_032304Re-query CCDS DB by Protein ID:NP_115680Link to BLAST:NP_115680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277066.1 282 Q6PII5-2 282 100% 0 0
NP_001277068.1 282 Q6PII5-2 282 100% 0 0
NP_001310564.1 282 Q6PII5-2 282 100% 0 0
NP_115680.1 282 Q6PII5-2 282 100% 0 0

Chromosomal Locations for CCDS 32354.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 727510 727614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 727965 728029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 728116 728233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 728316 728424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 728504 728604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 728794 728895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 729009 729088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 729288 729456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAAGGTCAAGGTCATCCCCGTGCTCGAGGACAACTACATGTACCTGGTCATCGAGGAGCTCACGCGCG
AGGCGGTGGCCGTGGACGTGGCTGTGCCCAAGAGGCTGCTGGAGATCGTGGGCCGGGAGGGGGTGTCTCT
GACCGCTGTGCTGACCACCCACCATCACTGGGACCACGCGCGGGGAAACCCGGAGCTGGCGCGGCTTCGT
CCCGGGCTGGCGGTGCTGGGCGCGGACGAGCGCATCTTCTCGCTGACGCGCAGGCTGGCGCACGGCGAGG
AGCTGCGGTTCGGGGCCATCCACGTGCGTTGCCTCCTGACGCCCGGCCACACCGCCGGCCACATGAGCTA
CTTCCTGTGGGAGGACGATTGCCCGGACCCACCCGCCCTGTTCTCGGGCGACGCGCTGTCGGTGGCCGGC
TGCGGCTCGTGCCTGGAGGGCAGCGCCCAGCAGATGTACCAGAGCCTGGCCGAGCTGGGTACCCTGCCCC
CCGAGACGAAGGTGTTCTGCGGCCACGAGCACACGCTTAGCAACCTGGAGTTTGCCCAGAAAGTGGAGCC
CTGCAACGACCACGTGAGAGCCAAGCTGTCCTGGGCTAAGAAGAGGGATGAGGATGACGTGCCCACTGTG
CCGTCGACTCTGGGCGAGGAGCGCCTCTACAACCCCTTCCTGCGGGTGGCAGAGGAGCCGGTGCGCAAGT
TCACGGGCAAGGCGGTCCCCGCCGACGTCCTGGAGGCGCTATGCAAGGAGCGGGCGCGCTTCGAACAGGC
GGGCGAGCCGCGGCAGCCACAGGCGCGGGCCCTCCTTGCGCTGCAGTGGGGGCTCCTGAGTGCAGCCCCA
CACGACTGA

Translation (282 aa):
MKVKVIPVLEDNYMYLVIEELTREAVAVDVAVPKRLLEIVGREGVSLTAVLTTHHHWDHARGNPELARLR
PGLAVLGADERIFSLTRRLAHGEELRFGAIHVRCLLTPGHTAGHMSYFLWEDDCPDPPALFSGDALSVAG
CGSCLEGSAQQMYQSLAELGTLPPETKVFCGHEHTLSNLEFAQKVEPCNDHVRAKLSWAKKRDEDDVPTV
PSTLGEERLYNPFLRVAEEPVRKFTGKAVPADVLEALCKERARFEQAGEPRQPQARALLALQWGLLSAAP
HD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH