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Report for CCDS32398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32398.1 Public Homo sapiens 16 GPR139 24 110 108 CCDS HistoryNCBI Gene:124274Re-query CCDS DB by CCDS ID:32398.1Re-query CCDS DB by GeneID:124274See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000570682.2 ENSP00000458791.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000570682.2Link to Ensembl Protein Viewer:ENSP00000458791.2Re-query CCDS DB by Nucleotide ID:ENST00000570682Re-query CCDS DB by Protein ID:ENSP00000458791
Original member Current member NCBI NM_001002911.4 NP_001002911.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002911.4Link to Protein Sequence:NP_001002911.1Re-query CCDS DB by Nucleotide ID:NM_001002911Re-query CCDS DB by Protein ID:NP_001002911Link to BLAST:NP_001002911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002911.1 353 Q6DWJ6 353 100% 0 0

Chromosomal Locations for CCDS 32398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20031735 20032669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20073490 20073616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGAGCACACGCACGCCCACCTCGCAGCCAACAGCTCGCTGTCTTGGTGGTCCCCCGGCTCGGCCTGCG
GCTTGGGTTTCGTGCCCGTGGTCTACTACAGCCTCTTGCTGTGCCTCGGTTTACCAGCAAATATCTTGAC
AGTGATCATCCTCTCCCAGCTGGTGGCAAGAAGACAGAAGTCCTCCTACAACTATCTCTTGGCACTCGCT
GCTGCCGACATCTTGGTCCTCTTTTTCATAGTGTTTGTGGACTTCCTGTTGGAAGATTTCATCTTGAACA
TGCAGATGCCTCAGGTCCCCGACAAGATCATAGAAGTGCTGGAATTCTCATCCATCCACACCTCCATATG
GATTACTGTACCGTTAACCATTGACAGGTATATCGCTGTCTGCCACCCGCTCAAGTACCACACGGTCTCA
TACCCAGCCCGCACCCGGAAAGTCATTGTAAGTGTTTACATCACCTGCTTCCTGACCAGCATCCCCTATT
ACTGGTGGCCCAACATCTGGACTGAAGACTACATCAGCACCTCTGTGCATCACGTCCTCATCTGGATCCA
CTGCTTCACCGTCTACCTGGTGCCCTGCTCCATCTTCTTCATCTTGAACTCAATCATTGTGTACAAGCTC
AGGAGGAAGAGCAATTTTCGTCTCCGTGGCTACTCCACGGGGAAGACCACCGCCATCTTGTTCACCATTA
CCTCCATCTTTGCCACACTTTGGGCCCCCCGCATCATCATGATTCTTTACCACCTCTATGGGGCGCCCAT
CCAGAACCGCTGGCTGGTACACATCATGTCCGACATTGCCAACATGCTAGCCCTTCTGAACACAGCCATC
AACTTCTTCCTCTACTGCTTCATCAGCAAGCGGTTCCGCACCATGGCAGCCGCCACGCTCAAGGCTTTCT
TCAAGTGCCAGAAGCAACCTGTACAGTTCTACACCAATCATAACTTTTCCATAACAAGTAGCCCCTGGAT
CTCGCCGGCAAACTCACACTGCATCAAGATGCTGGTGTACCAGTATGACAAAAATGGAAAACCTATAAAA
GTATCCCCGTGA

Translation (353 aa):
MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVIILSQLVARRQKSSYNYLLALA
AADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFSSIHTSIWITVPLTIDRYIAVCHPLKYHTVS
YPARTRKVIVSVYITCFLTSIPYYWWPNIWTEDYISTSVHHVLIWIHCFTVYLVPCSIFFILNSIIVYKL
RRKSNFRLRGYSTGKTTAILFTITSIFATLWAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAI
NFFLYCFISKRFRTMAAATLKAFFKCQKQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGKPIK
VSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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