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Report for CCDS32639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32639.1 Public Homo sapiens 17 FBXO47 24 110 108 CCDS HistoryNCBI Gene:494188Re-query CCDS DB by CCDS ID:32639.1Re-query CCDS DB by GeneID:494188See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32639.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378079.3 ENSP00000367319.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378079.3Link to Ensembl Protein Viewer:ENSP00000367319.2Re-query CCDS DB by Nucleotide ID:ENST00000378079Re-query CCDS DB by Protein ID:ENSP00000367319
Original member Current member NCBI NM_001008777.3 NP_001008777.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008777.3Link to Protein Sequence:NP_001008777.2Re-query CCDS DB by Nucleotide ID:NM_001008777Re-query CCDS DB by Protein ID:NP_001008777Link to BLAST:NP_001008777.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008777.2 452 Q5MNV8 452 100% 0 0

Chromosomal Locations for CCDS 32639.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38937175 38937290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38938573 38938732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38942778 38942920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38943590 38943736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38944960 38945136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38951581 38951689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38954856 38954933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38957177 38957253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38961877 38962047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38962845 38963025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCATCCAGAATAAATACAAATTTCACTTTGATTCCCAACCAGAAACTTAGACGTAGTAATCGTCAAA
CCAGCTGTTATTCCAAGACCCTTGGCTCAGGCTTTCAACCCATATCAACATTTGGAAATTTTAAAGCCTT
ACCATTGGAAATATTCCAGATAATTTTAAAATATTTGTCAGTGAAGGATATCAGCATGCTAAGCATGGTG
TCCAAAACAGTCAGCCAACACATTATTAATTATATCTCAACCTCATCAGGAAGCAAAAGACTTTTACTAC
AGGACTTTCATAACCTTGAGCTGCCTGACAGGAGACAAGACTCTGCTATACTGGAGCACTACAGATCTCT
AGGTCTACTGTTTAAAAGATGCACATTGCTGCTACCCACCAAGGAAAGGCTAAAATACATTCACAAGATA
CTCACAGAAGTTTCCTGCTTTAAATTCAATGGCTGTGCAGCTCCTATGCAGTGTTTAGGATTAACATGTT
ATGGCATGTTTTTACAGACCTTAACAGCAGGTTGGGATGAACTTGAGTGCCATCGCGTTTATAATTTCTT
ATGCGAACTGACTAATCTCTGCCGCAAGATACAAATGGCTGTCTGCAGCAAACCAGGAAGTGCCCAAAAA
CTGGAGTTAAGAATCAGACTCTTCTGTAGGAATGTCCTCCTTGATCATTGGACACATCGAAGTGATTCTG
CTTTTTGGTTGACGCGAATATTAAAACCATGGCCAATGGTGAATCAGGCAAGATTACTGTATATCATCTT
TGGGCCAATATCTCCTCAAGATGGACAGGTGGTTTGGCAGGAAATGATAGAAGAACCTACAGATGAATTC
AGTCTGAAAGGTTTGGCTGATGCCATTAAGTTACTATATGACGCTAGCACTAAAGAGTGGACAGCAGATG
ATGTTATCAGTCTTGTAGATGAACTATCAGTGGTTCCCCGTGAGTGGCTTCTAGAGAATAATGCACGTCT
CCTAATGCTAAGTGGAAACAACATCTGTTTCAGTTTCATGGCTAGTAAAGCTGTGAATGGACGCACCATT
GAACTGGCAAGGCTCGTAGTCTTTTTGGCTTTGGTGTGTGAGAAAGAACTGTACTGCATGGATTGGACAG
TTAAAATGATGCAAAAAGTCTGCAAAGTCTTTAGCACTCCAGTGGAAAGAAAGAACTTCCTGCAGAATGT
GGCAAATGCATTTGCATGTGTTATAATGGAAATGCTGCAATCAATTATGTCTGGAGACCGTGATGAAGAT
GACAGAAGCTTTTTGAATTTGTTCCATCTTGTACATGCTCAGGCTAACTTCCATAAGGAGGTCCTGTATT
TGACCATGAATACTCCTCTGTCTACCTAA

Translation (452 aa):
MASRINTNFTLIPNQKLRRSNRQTSCYSKTLGSGFQPISTFGNFKALPLEIFQIILKYLSVKDISMLSMV
SKTVSQHIINYISTSSGSKRLLLQDFHNLELPDRRQDSAILEHYRSLGLLFKRCTLLLPTKERLKYIHKI
LTEVSCFKFNGCAAPMQCLGLTCYGMFLQTLTAGWDELECHRVYNFLCELTNLCRKIQMAVCSKPGSAQK
LELRIRLFCRNVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPISPQDGQVVWQEMIEEPTDEF
SLKGLADAIKLLYDASTKEWTADDVISLVDELSVVPREWLLENNARLLMLSGNNICFSFMASKAVNGRTI
ELARLVVFLALVCEKELYCMDWTVKMMQKVCKVFSTPVERKNFLQNVANAFACVIMEMLQSIMSGDRDED
DRSFLNLFHLVHAQANFHKEVLYLTMNTPLST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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