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Report for CCDS3279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3279.1 Public Homo sapiens 3 FETUB 24 110 108 CCDS HistoryNCBI Gene:26998Re-query CCDS DB by CCDS ID:3279.1Re-query CCDS DB by GeneID:26998See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265029.8 ENSP00000265029.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265029.8Link to Ensembl Protein Viewer:ENSP00000265029.3Re-query CCDS DB by Nucleotide ID:ENST00000265029Re-query CCDS DB by Protein ID:ENSP00000265029
Original member Current member EBI ENST00000450521.5 ENSP00000404288.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450521.5Link to Ensembl Protein Viewer:ENSP00000404288.1Re-query CCDS DB by Nucleotide ID:ENST00000450521Re-query CCDS DB by Protein ID:ENSP00000404288
Original member Current member NCBI NM_001375587.2 NP_001362516.1 Accepted alive Link to Nucleotide Sequence:NM_001375587.2Link to Protein Sequence:NP_001362516.1Re-query CCDS DB by Nucleotide ID:NM_001375587Re-query CCDS DB by Protein ID:NP_001362516Link to BLAST:NP_001362516.1
Original member Current member NCBI NM_014375.3 NP_055190.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014375.3Link to Protein Sequence:NP_055190.2Re-query CCDS DB by Nucleotide ID:NM_014375Re-query CCDS DB by Protein ID:NP_055190Link to BLAST:NP_055190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362516.1 382 Q9UGM5-1 382 100% 0 0
NP_055190.2 382 Q9UGM5-1 382 100% 0 0

Chromosomal Locations for CCDS 3279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 186640461 186640685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186641030 186641140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186642471 186642558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186644751 186644920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186646248 186646349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186651218 186651301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186652263 186652631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGTCTGCTCCTTCCCCTGGCACTCTGCATCCTAGTCCTGTGCTGCGGAGCAATGTCTCCACCCCAGC
TGGCCCTCAACCCCTCGGCTCTGCTCTCCCGGGGCTGCAATGACTCAGATGTGCTGGCAGTTGCAGGCTT
TGCCCTGCGGGATATTAACAAAGACAGAAAGGATGGCTATGTGCTGAGACTCAACCGAGTGAACGACGCC
CAGGAATACAGACGGGGTGGCCTGGGATCTCTGTTCTATCTTACACTGGATGTGCTAGAGACTGACTGCC
ATGTGCTCAGAAAGAAGGCATGGCAAGACTGTGGAATGAGGATATTTTTTGAATCAGTTTATGGTCAATG
CAAAGCAATATTTTATATGAACAACCCAAGTAGAGTTCTCTATTTAGCTGCTTATAACTGTACTCTTCGC
CCAGTTTCAAAAAAAAAGATTTACATGACGTGCCCTGACTGCCCAAGCTCCATACCCACTGACTCTTCCA
ATCACCAAGTGCTGGAGGCTGCCACCGAGTCTCTTGCGAAATACAACAATGAGAACACATCCAAGCAGTA
TTCTCTCTTCAAAGTCACCAGGGCTTCTAGCCAGTGGGTGGTCGGCCCTTCTTACTTTGTGGAATACTTA
ATTAAAGAATCACCATGTACTAAATCCCAGGCCAGCAGCTGTTCACTTCAGTCCTCCGACTCTGTGCCTG
TTGGTCTTTGCAAAGGTTCTCTGACTCGAACACACTGGGAAAAGTTTGTCTCTGTGACTTGTGACTTCTT
TGAATCACAGGCTCCAGCCACTGGAAGTGAAAACTCTGCTGTTAACCAGAAACCTACAAACCTTCCCAAG
GTGGAAGAATCCCAGCAGAAAAACACCCCCCCAACAGACTCCCCCTCCAAAGCTGGGCCAAGAGGATCTG
TCCAATATCTTCCTGACTTGGATGATAAAAATTCCCAGGAAAAGGGCCCTCAGGAGGCCTTTCCTGTGCA
TCTGGACCTAACCACGAATCCCCAGGGAGAAACCCTGGATATTTCCTTCCTCTTCCTGGAGCCTATGGAG
GAGAAGCTGGTGGTCCTGCCTTTCCCCAAAGAAAAAGCACGCACTGCTGAGTGCCCAGGGCCAGCCCAGA
ATGCCAGCCCTCTTGTCCTTCCGCCATGA

Translation (382 aa):
MGLLLPLALCILVLCCGAMSPPQLALNPSALLSRGCNDSDVLAVAGFALRDINKDRKDGYVLRLNRVNDA
QEYRRGGLGSLFYLTLDVLETDCHVLRKKAWQDCGMRIFFESVYGQCKAIFYMNNPSRVLYLAAYNCTLR
PVSKKKIYMTCPDCPSSIPTDSSNHQVLEAATESLAKYNNENTSKQYSLFKVTRASSQWVVGPSYFVEYL
IKESPCTKSQASSCSLQSSDSVPVGLCKGSLTRTHWEKFVSVTCDFFESQAPATGSENSAVNQKPTNLPK
VEESQQKNTPPTDSPSKAGPRGSVQYLPDLDDKNSQEKGPQEAFPVHLDLTTNPQGETLDISFLFLEPME
EKLVVLPFPKEKARTAECPGPAQNASPLVLPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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