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Report for CCDS32873.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32873.2 Public Homo sapiens 19 TJP3 24 110 108 CCDS HistoryNCBI Gene:27134Re-query CCDS DB by CCDS ID:32873.2Re-query CCDS DB by GeneID:27134See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 32873.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32873.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541714.7 ENSP00000439278.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000541714.7Link to Ensembl Protein Viewer:ENSP00000439278.1Re-query CCDS DB by Nucleotide ID:ENST00000541714Re-query CCDS DB by Protein ID:ENSP00000439278
Original member Current member NCBI NM_001267560.2 NP_001254489.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001267560.2Link to Protein Sequence:NP_001254489.1Re-query CCDS DB by Nucleotide ID:NM_001267560Re-query CCDS DB by Protein ID:NP_001254489Link to BLAST:NP_001254489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254489.1 919 O95049-1 919 100% 0 0

Chromosomal Locations for CCDS 32873.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3728433 3728480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3728604 3728713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3730028 3730130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3730355 3730706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3731935 3732038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3733753 3733912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3734327 3734435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3735566 3735639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3735869 3735935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3736165 3736321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3738555 3738663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3738897 3739134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3740552 3740763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3743939 3744034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3746011 3746081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3746485 3746695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3746776 3746876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3747794 3748081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3750138 3750184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3750582 3750684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGGAGGAGCTGACCATCTGGGAACAGCACACGGCCACACTGTCCAAGGACCCCCGCCGGGGCTTTGGCA
TTGCGATCTCTGGAGGCCGAGACCGGCCCGGTGGATCCATGGTTGTATCTGACGTGGTACCTGGAGGGCC
GGCGGAGGGCAGGCTACAGACAGGCGACCACATCGTCATGGTGAACGGGGTTTCCATGGAGAATGCCACC
TCCGCGTTTGCCATTCAGATACTCAAGACCTGCACCAAGATGGCCAACATCACAGTGAAACGTCCCCGGA
GGATCCACCTGCCCGCCACCAAAGCCAGCCCCTCCAGCCCAGGGCGCCAGGACTCGGATGAAGACGATGG
GCCCCAGCGGGTGGAGGAGGTGGACCAGGGCCGGGGCTATGACGGCGACTCATCCAGTGGCTCCGGCCGC
TCCTGGGACGAGCGCTCCCGCCGGCCGAGGCCTGGTCGCCGGGGCCGGGCCGGCAGCCATGGGCGTAGGA
GCCCAGGTGGTGGCTCTGAGGCCAACGGGCTGGCCCTGGTGTCCGGCTTTAAGCGGCTGCCACGGCAGGA
CGTGCAGATGAAGCCTGTGAAGTCAGTGCTGGTGAAGAGGAGAGACAGCGAAGAGTTTGGCGTCAAGCTG
GGCAGTCAGATCTTCATCAAGCACATTACAGATTCGGGCCTGGCTGCCCGGCACCGTGGGCTGCAGGAAG
GAGATCTCATTCTACAGATCAACGGGGTGTCTAGCCAGAACCTGTCACTGAACGACACCCGGCGACTGAT
TGAGAAGTCAGAAGGGAAGCTAAGCCTGCTGGTGCTGAGAGATCGTGGGCAGTTCCTGGTGAACATTCCG
CCTGCTGTCAGTGACAGCGACAGCTCGCCATTGGAGGACATCTCGGACCTCGCCTCGGAGCTATCGCAGG
CACCACCATCCCACATCCCACCACCACCCCGGCATGCTCAGCGGAGCCCCGAGGCCAGCCAGACCGACTC
TCCCGTGGAGAGTCCCCGGCTTCGGCGGGAAAGTTCAGTAGATTCCAGAACCATCTCGGAACCAGATGAG
CAACGGTCAGAGTTGCCCAGGGAAAGCAGCTATGACATCTACAGAGTGCCCAGCAGTCAGAGCATGGAGG
ATCGTGGGTACAGCCCCGACACGCGTGTGGTCCGCTTCCTCAAGGGCAAGAGCATCGGGCTGCGGCTGGC
AGGGGGCAATGACGTGGGCATCTTCGTGTCCGGGGTGCAGGCGGGCAGCCCGGCCGACGGGCAGGGCATC
CAGGAGGGAGATCAGATTCTGCAGGTGAATGACGTGCCATTCCAGAACCTGACACGGGAGGAGGCAGTGC
AGTTCCTGCTGGGGCTGCCACCAGGCGAGGAGATGGAGCTGGTGACGCAGAGGAAGCAGGACATTTTCTG
GAAAATGGTGCAGTCCCGCGTGGGTGACTCCTTCTACATCCGCACTCACTTTGAGCTGGAGCCCAGTCCA
CCGTCTGGCCTGGGCTTCACCCGTGGCGACGTCTTCCACGTGCTGGACACGCTGCACCCCGGCCCCGGGC
AGAGCCACGCACGAGGAGGCCACTGGCTGGCGGTGCGCATGGGTCGTGACCTGCGGGAGCAAGAGCGGGG
CATCATTCCCAACCAGAGCAGGGCGGAGCAGCTGGCCAGCCTGGAAGCTGCCCAGAGGGCCGTGGGAGTC
GGGCCCGGCTCCTCCGCGGGCTCCAATGCTCGGGCCGAGTTCTGGCGGCTGCGGGGTCTTCGTCGAGGAG
CCAAGAAGACCACTCAGCGGAGCCGTGAGGACCTCTCAGCTCTGACCCGACAGGGCCGCTACCCGCCCTA
CGAACGAGTGGTGTTGCGAGAAGCCAGTTTCAAGCGCCCGGTAGTGATCCTGGGACCCGTGGCCGACATT
GCTATGCAGAAGTTGACTGCTGAGATGCCTGACCAGTTTGAAATCGCAGAGACTGTGTCCAGGACCGACA
GCCCCTCCAAGATCATCAAACTAGACACCGTGCGGGTGATTGCAGAAAAAGACAAGCATGCGCTCCTGGA
TGTGACCCCCTCCGCCATCGAGCGCCTCAACTATGTGCAGTACTACCCCATTGTGGTCTTCTTCATCCCC
GAGAGCCGGCCGGCCCTCAAGGCACTGCGCCAGTGGCTGGCGCCTGCCTCCCGCCGCAGCACCCGTCGCC
TCTACGCACAAGCCCAGAAGCTGCGAAAACACAGCAGCCACCTCTTCACAGCCACCATCCCTCTGAATGG
CACGAGTGACACCTGGTACCAGGAGCTCAAGGCCATCATTCGAGAGCAGCAGACGCGGCCCATCTGGACG
GCGGAAGATCAGCTGGATGGCTCCTTGGAGGACAACCTAGACCTCCCTCACCACGGCCTGGCCGACAGCT
CCGCTGACCTCAGCTGCGACAGCCGCGTTAACAGCGACTACGAGACGGACGGCGAGGGCGGCGCGTACAC
GGATGGCGAGGGCTACACAGACGGCGAGGGGGGGCCCTACACGGATGTGGATGATGAGCCCCCGGCTCCA
GCCCTGGCCCGGTCCTCGGAGCCCGTGCAGGCAGATGAGTCCCAGAGCCCGAGGGATCGTGGGAGAATCT
CGGCTCATCAGGGGGCCCAGGTGGACAGCCGCCACCCCCAGGGACAGTGGCGACAGGACAGCATGCGAAC
CTATGAACGGGAAGCCCTGAAGAAAAAGTTTATGCGAGTACATGATGCGGAGTCCTCCGATGAAGACGGC
TATGACTGGGGTCCGGCCACTGACCTGTGA

Translation (919 aa):
MEELTIWEQHTATLSKDPRRGFGIAISGGRDRPGGSMVVSDVVPGGPAEGRLQTGDHIVMVNGVSMENAT
SAFAIQILKTCTKMANITVKRPRRIHLPATKASPSSPGRQDSDEDDGPQRVEEVDQGRGYDGDSSSGSGR
SWDERSRRPRPGRRGRAGSHGRRSPGGGSEANGLALVSGFKRLPRQDVQMKPVKSVLVKRRDSEEFGVKL
GSQIFIKHITDSGLAARHRGLQEGDLILQINGVSSQNLSLNDTRRLIEKSEGKLSLLVLRDRGQFLVNIP
PAVSDSDSSPLEDISDLASELSQAPPSHIPPPPRHAQRSPEASQTDSPVESPRLRRESSVDSRTISEPDE
QRSELPRESSYDIYRVPSSQSMEDRGYSPDTRVVRFLKGKSIGLRLAGGNDVGIFVSGVQAGSPADGQGI
QEGDQILQVNDVPFQNLTREEAVQFLLGLPPGEEMELVTQRKQDIFWKMVQSRVGDSFYIRTHFELEPSP
PSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGV
GPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADI
AMQKLTAEMPDQFEIAETVSRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIP
ESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWT
AEDQLDGSLEDNLDLPHHGLADSSADLSCDSRVNSDYETDGEGGAYTDGEGYTDGEGGPYTDVDDEPPAP
ALARSSEPVQADESQSPRDRGRISAHQGAQVDSRHPQGQWRQDSMRTYEREALKKKFMRVHDAESSDEDG
YDWGPATDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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