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Report for CCDS33826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33826.1 Public Homo sapiens 3 GRAMD1C 24 110 108 CCDS HistoryNCBI Gene:54762Re-query CCDS DB by CCDS ID:33826.1Re-query CCDS DB by GeneID:54762See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33826.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358160.9 ENSP00000350881.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358160.9Link to Ensembl Protein Viewer:ENSP00000350881.4Re-query CCDS DB by Nucleotide ID:ENST00000358160Re-query CCDS DB by Protein ID:ENSP00000350881
Original member Current member NCBI NM_017577.5 NP_060047.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017577.5Link to Protein Sequence:NP_060047.3Re-query CCDS DB by Nucleotide ID:NM_017577Re-query CCDS DB by Protein ID:NP_060047Link to BLAST:NP_060047.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060047.3 662 Q8IYS0-1 662 100% 0 0

Chromosomal Locations for CCDS 33826.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113838910 113838936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113844503 113844649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113869507 113869591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113875484 113875587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113876165 113876260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113882752 113882832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113901031 113901146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113904140 113904272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113908958 113909120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113915701 113915838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113930714 113930832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113933511 113933653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113934432 113934535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113936266 113936442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113938086 113938143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113939886 113939996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113940240 113940345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113945398 113945478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGGAGGGCGCTCCGACTGTCCGTCAGGTGATGAATGAAGGGGATTCAAGCCTTGCCACCGACTTACAGG
AAGATGTAGAGGAAAATCCTAGTCCAACTGTGGAAGAGAATAATGTGGTAGTTAAAAAACAGGGGCCAAA
TTTACATAATTGGAGTGGTGACTGGAGCTTTTGGATTTCAAGTTCCACCTATAAAGACAGGAATGAGGAA
TACAGAAGACAGTTCACACATCTACCTGATACAGAGAGGCTGATAGCAGATTATGCTTGTGCTCTTCAGA
GGGACATTTTGCTTCAGGGACGACTATACCTTTCAGAAAACTGGCTATGTTTCTATAGCAACATCTTCAG
ATGGGAAACTACAATTTCTATTGCTTTAAAGAATATAACCTTCATGACCAAGGAAAAAACTGCTCGACTC
ATCCCAAACGCTATCCAGATAGTTACAGAAAGTGAAAAGTTTTTCTTCACATCTTTTGGTGCCAGGGATA
GAAGTTACCTCAGTATCTTTAGGTTGTGGCAGAATGTATTATTAGATAAGAGCCTGACTAGACAGGAATT
CTGGCAACTGCTCCAGCAGAACTATGGCACTGAGCTAGGTTTAAATGCTGAGGAGATGGAAAACTTGTCA
CTGTCGATTGAGGATGTGCAGCCAAGAAGTCCAGGAAGAAGCAGCTTGGATGACTCTGGGGAGAGAGATG
AAAAATTATCCAAGTCAATCAGTTTTACCAGTGAATCAATTAGTCGGGTTTCAGAAACAGAGTCATTCGA
TGGAAATTCATCAAAAGGAGGATTAGGCAAAGAGGAGTCCCAAAATGAGAAACAGACCAAAAAGAGTCTC
TTACCAACTTTGGAAAAGAAGTTAACTAGAGTGCCATCAAAGTCACTGGACTTGAATAAAAATGAATATC
TTTCTCTGGACAAAAGCAGCACTTCAGATTCTGTTGATGAAGAAAATGTTCCTGAGAAAGATCTTCATGG
AAGACTTTTTATCAACCGTATTTTTCATATCAGTGCTGACAGAATGTTTGAATTGCTCTTTACCAGTTCA
CGCTTTATGCAGAAATTTGCCAGTTCTAGAAATATAATAGATGTAGTATCTACCCCTTGGACTGCAGAAC
TTGGAGGTGATCAGCTGAGAACGATGACCTACACTATAGTCCTTAATAGTCCACTTACTGGAAAATGCAC
TGCTGCCACTGAAAAGCAGACACTGTATAAAGAAAGTCGGGAAGCACGATTTTATTTGGTAGATTCAGAA
GTACTGACACATGATGTCCCCTACCATGATTACTTCTATACCGTGAACAGATACTGTATCATCCGATCTT
CAAAACAGAAATGCAGGCTAAGAGTTTCCACAGATTTGAAATACAGAAAACAGCCATGGGGCCTTGTCAA
ATCTTTAATTGAAAAGAATTCCTGGAGTTCTTTGGAGGACTATTTCAAACAGCTTGAATCAGATTTGTTA
ATTGAAGAATCTGTATTAAATCAGGCCATTGAAGACCCTGGAAAACTTACTGGCCTACGAAGGAGAAGGC
GAACCTTCAACCGAACAGCAGAAACAGTTCCTAAACTTTCCTCTCAGCATTCCTCTGGAGATGTGGGCTT
AGGTGCCAAAGGGGATATTACAGGAAAGAAAAAGGAAATGGAAAACTATAACGTCACTCTTATTGTGGTA
ATGAGTATTTTTGTGTTGTTATTAGTTTTGTTGAATGTGACACTGTTTCTGAAGCTGTCAAAGATAGAAC
ATGCTGCTCAGTCCTTTTACCGTCTCCGCCTCCAAGAAGAGAAATCTTTAAATTTAGCCTCTGATATGGT
GTCAAGAGCAGAAACTATTCAGAAGAATAAAGATCAGGCCCATCGTTTAAAGGGAGTGCTCCGAGACTCC
ATAGTGATGCTTGAACAGCTGAAGAGCTCACTCATTATGCTTCAGAAAACGTTTGATCTACTAAATAAGA
ATAAGACTGGCATGGCTGTTGAAAGCTAG

Translation (662 aa):
MEGAPTVRQVMNEGDSSLATDLQEDVEENPSPTVEENNVVVKKQGPNLHNWSGDWSFWISSSTYKDRNEE
YRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWETTISIALKNITFMTKEKTARL
IPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQEFWQLLQQNYGTELGLNAEEMENLS
LSIEDVQPRSPGRSSLDDSGERDEKLSKSISFTSESISRVSETESFDGNSSKGGLGKEESQNEKQTKKSL
LPTLEKKLTRVPSKSLDLNKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFTSS
RFMQKFASSRNIIDVVSTPWTAELGGDQLRTMTYTIVLNSPLTGKCTAATEKQTLYKESREARFYLVDSE
VLTHDVPYHDYFYTVNRYCIIRSSKQKCRLRVSTDLKYRKQPWGLVKSLIEKNSWSSLEDYFKQLESDLL
IEESVLNQAIEDPGKLTGLRRRRRTFNRTAETVPKLSSQHSSGDVGLGAKGDITGKKKEMENYNVTLIVV
MSIFVLLLVLLNVTLFLKLSKIEHAAQSFYRLRLQEEKSLNLASDMVSRAETIQKNKDQAHRLKGVLRDS
IVMLEQLKSSLIMLQKTFDLLNKNKTGMAVES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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