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Report for CCDS33984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33984.1 Public Homo sapiens 4 SCFD2 24 110 108 CCDS HistoryNCBI Gene:152579Re-query CCDS DB by CCDS ID:33984.1Re-query CCDS DB by GeneID:152579See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401642.8 ENSP00000384182.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401642.8Link to Ensembl Protein Viewer:ENSP00000384182.3Re-query CCDS DB by Nucleotide ID:ENST00000401642Re-query CCDS DB by Protein ID:ENSP00000384182
Original member Current member NCBI NM_152540.4 NP_689753.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152540.4Link to Protein Sequence:NP_689753.2Re-query CCDS DB by Nucleotide ID:NM_152540Re-query CCDS DB by Protein ID:NP_689753Link to BLAST:NP_689753.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689753.2 684 Q8WU76-1 684 100% 0 0

Chromosomal Locations for CCDS 33984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 52873969 52874061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52885747 52885866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52907457 52907591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52920725 52920870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53145333 53145582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53273826 53274001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53313636 53313763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53352598 53352766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53365104 53365941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGAGCGCCTCGGGCGTACTGTCCTTTACCCAGCAAGGATGGGAGCAGGTGCTGGCCAAAGTGAAACGGG
CTGTGGTTTACCTGGACGCCGCCTGCGCCGAGAGCCTGCACTGGGGCTGCGGATCCACCCGTCTCCTGGA
GGCGGTGGGGGGTCCTGACTGTCACCTGCGAGAGTTCGAGCCCGACGCAATTGGTGGTGGAGCCAAGCAG
CCCAAGGCAGTGTTTGTGCTGAGCTGCCTGCTGAAAGGCCGGACCGTGGAGATCCTACGGGACATCATCT
GCCGCAGTCACTTCCAGTATTGTGTGGTGGTCACAACCGTGAGCCACGCTGTCCACCTCACAGCTAATCA
TGTCCCAGCGGCGGCAGCGGCCGAGATGGAGGGGCAGCAGCCGGTGTTCGAGCAGCTGGAGGAGAAGCTG
TGTGAATGGATGGGCAACATGAACTACACGGCCGAGGTGTTCCATGTCCCGTTATTGCTTGCCCCTGTTG
CTCCCCACTTTGCCTTGACTCCAGCTTTTGCATCCCTTTTCCCACTGCTACCCCAGGATGTGCACCTCCT
TAATAGCGCCCGACCGGACAAGAGGAAGCTGGGAAGCCTGGGTGATGTGGACTCCACTACGCTAACCCCA
GAGCTGCTGCTGCAGATCAGATGCCTAGTGTCAGGCCTCAGTTCTCTGTGTGAACATTTAGGAGTACGGG
AGGAGTGTTTTGCTGTAGGTTCCTTAAGTCAGGTCATCGCTGCGGATCTGGCCAATTATGCCCCTGCAAA
GAACAGGAAGAAGACTGCTGCAGGCAGGGCATCAGTGGTTTTTGTGGACAGAACCCTGGATCTCACAGGA
GCAGTTGGACATCATGGAGACAACTTAGTAGAGAAGATCATTTCAGCACTTCCCCAGCTCCCAGGCCACA
CAAATGATGTGATGGTTAACATGATAGCGCTCACTGCACTCCATACTGAGGAGGAAAATTATAATGTGGT
TGCACCAGGCTGTCTTTCACAATCCAGTGACACCACAGCCAAAGCCCTATGGGAAGCTTTACTGAACACT
AAGCACAAAGAGGCAGTGATGGAAGTTCGGAGACATCTAGTGGAAGCGGCAAGCAGAGAAAACCTGCCAA
TCAAGATGAGTATGGGGAGAGTCACACCGGGACAGCTCATGTCCTATATTCAGCTCTTCAAGAACAACCT
CAAAGCTCTAATGAATCATTGTGGCCTCCTCCAGCTTGGACTGGCCACAGCTCAAACGTTGAAACACCCA
CAGACTGCCAAGTGGGACAACTTTCTGGCTTTTGAAAGGCTCCTTCTTCAGAGCATTGGGGAGTCAGCAA
TGTCCGTTGTGTTAAATCAGCTGCTGCCCATGATTAAGCCTGTAACCCAGAGAACCAACGAGGACTACAG
CCCTGAGGAACTGCTGATCCTTCTCATATATATTTATTCTGTCACTGGAGAGCTCACGGTAGACAAAGAC
CTGTGTGAAGCAGAAGAAAAAGTCAAGAAAGCATTGGCTCAGGTCTTCTGTGAGGAATCTGGATTGTCAC
CTTTGCTGCAAAAAATTACGGACTGGGACTCTTCAATTAATCTGACATTTCACAAATCCAAAATTGCCGT
GGATGAACTCTTTACTTCACTTCGGGATATTGCTGGAGCTCGGAGTCTCCTGAAACAGTTTAAGTCTGTA
TATGTTCCTGGAAATCATACCCACCAGGCATCTTATAAGCCATTGTTGAAGCAAGTTGTGGAGGAAATAT
TTCATCCCGAGAGGCCAGATTCCGTTGATATTGAACACATGTCTTCAGGCCTCACTGATCTCCTTAAAAC
TGGATTTAGCATGTTCATGAAGGTGAGCCGGCCTCATCCTAGTGACTACCCCCTCCTGATCCTCTTTGTG
GTAGGTGGGGTCACAGTCTCTGAAGTGAAAATGGTCAAAGATCTTGTGGCATCGTTGAAGCCAGGAACCC
AGGTAATCGTGCTGTCCACACGACTCCTGAAGCCACTTAACATTCCTGAGCTGTTATTTGCAACTGACCG
ACTGCATCCAGACCTTGGCTTCTGA

Translation (684 aa):
MSASGVLSFTQQGWEQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFEPDAIGGGAKQ
PKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPAAAAAEMEGQQPVFEQLEEKL
CEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLLPQDVHLLNSARPDKRKLGSLGDVDSTTLTP
ELLLQIRCLVSGLSSLCEHLGVREECFAVGSLSQVIAADLANYAPAKNRKKTAAGRASVVFVDRTLDLTG
AVGHHGDNLVEKIISALPQLPGHTNDVMVNMIALTALHTEEENYNVVAPGCLSQSSDTTAKALWEALLNT
KHKEAVMEVRRHLVEAASRENLPIKMSMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHP
QTAKWDNFLAFERLLLQSIGESAMSVVLNQLLPMIKPVTQRTNEDYSPEELLILLIYIYSVTGELTVDKD
LCEAEEKVKKALAQVFCEESGLSPLLQKITDWDSSINLTFHKSKIAVDELFTSLRDIAGARSLLKQFKSV
YVPGNHTHQASYKPLLKQVVEEIFHPERPDSVDIEHMSSGLTDLLKTGFSMFMKVSRPHPSDYPLLILFV
VGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLLKPLNIPELLFATDRLHPDLGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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