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Report for CCDS3399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3399.1 Public Homo sapiens 4 SH3TC1 24 110 108 CCDS HistoryNCBI Gene:54436Re-query CCDS DB by CCDS ID:3399.1Re-query CCDS DB by GeneID:54436See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3399.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000245105.8 ENSP00000245105.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000245105.8Link to Ensembl Protein Viewer:ENSP00000245105.3Re-query CCDS DB by Nucleotide ID:ENST00000245105Re-query CCDS DB by Protein ID:ENSP00000245105
Original member Current member EBI ENST00000457650.7 ENSP00000390311.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457650.7Link to Ensembl Protein Viewer:ENSP00000390311.3Re-query CCDS DB by Nucleotide ID:ENST00000457650Re-query CCDS DB by Protein ID:ENSP00000390311
Original member Current member NCBI NM_018986.5 NP_061859.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018986.5Link to Protein Sequence:NP_061859.4Re-query CCDS DB by Nucleotide ID:NM_018986Re-query CCDS DB by Protein ID:NP_061859Link to BLAST:NP_061859.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061859.4 1336 Q8TE82 1336 100% 0 0

Chromosomal Locations for CCDS 3399.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8205195 8205366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8209748 8209822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8212701 8212828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8214475 8214580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8216111 8216257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8216957 8217167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8218271 8218347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8219335 8219530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8222840 8222970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8225175 8225216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8226980 8228644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8231976 8232156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8233363 8233513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8235433 8235555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8236278 8236428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8237474 8237670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8240698 8240955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4011 nt):
ATGGAGAACCTCCCTGCCGTGACCACTGAGGAGCCGACCCCCATGGGGAGGGGTCCTGTGGGACCCTCAG
GAGGTGGCAGCACCCGGGACCAGGTCCGGACTGTGGTCATGAGGCCCTCTGTGAGCTGGGAGAAAGCGGG
GCCCGAGGAGGCCAAGGCGCCAGTGAGAGGCGACGAGGCTCCTCCTGCCCGCGTGGCTGGGCCTGCTGCT
GGGACCCCTCCCTGCCAGATGGGGGTTTATCCCACAGACCTGACCCTGCAGCTGCTGGCTGTGCGGAGGA
AGAGCAGACTGCGGGACCCCGGCCTACAGCAGACCCTCCGGGGCCAGCTCCGCCTGCTGGAGAATGATAG
CCGGGAGATGGCCCGCGTGCTTGGGGAATTATCAGCCAGGCTGCTGTCCATCCACAGTGACCAGGACCGG
ATCGTGGTGACGTTTAAGACTTTTGAAGAAATCTGGAAGTTTTCCACCTACCATGCTCTCGGCTTCACTC
ATCACTGCCTGGCAAACCTGCTCATGGACCAGGCCTTCTGGCTGCTCTTGCCCAGTGAGGAGGAGGAGAC
GGCCATCCAAGTCCATGTGGATGAGAACGCCTTAAGGCTGACCCACGAGAGCCTCCTCATCCAAGAAGGG
CCCTTCTTTGTCCTGTGTCCTGACCACCATGTGAGAGTGATGACGGGTCCCCGGGATGCAGGAAATGGCC
CCCAGGCCCTCAGGCAGGCTTCGGGGGCACCCCAGGGAGAGGCGGCCCCGGAAACAGACTCTTCACCGCC
GAGCCCCAGCGTGTCCTCCGAGGAGGTGGCAGTGGCGGCCGCCCCGGAGCCTTTGATTCCATTTCATCAG
TGGGCTCTTAGGATCCCCCAGGACCCCATCGACGATGCCATGGGTGGCCCTGTGATGCCCGGCAACCCGC
TGATGGCTGTGGGCCTGGCCTCGGCATTGGCAGACTTCCAGGGCTCGGGGCCCGAAGAGATGACCTTCCG
AGGTGGCGACCTCATCGAGATCCTTGGGGCGCAGGTGCCCAGCCTGCCCTGGTGCGTGGGCCGACACGCA
GCCTCGGGCCGGGTGGGGTTTGTGCGGAGCAGCCTCATCAGCATGCAGGGCCCCGTGTCCGAGTTGGAAA
GTGCGATTTTTCTCAATGAGGAAGAAAAGTCATTCTTCAGCGAGGGCTGCTTTTCTGAGGAGGATGCCAG
GCAGTTGCTGAGGCGGATGTCGGGCACCGATGTCTGCAGCGTGTACAGCCTGGACTCAGTAGAGGAAGCT
GAGACCGAGCAGCCGCAGGAAAAAGAAATACCTCCACCTTGCCTGAGCCTGGAGCCACAGGAGACCTTGC
AGAAGGTGAAGAATGTTCTGGAACAATGCAAGACCTGCCCAGGCTGCCCCCAGGAGCCAGCGTCCTGGGG
TCTCTGTGCGGCATCCAGCGACGTGAGCTTGCAGGACCCCGAGGAGCCCTCCTTCTGCTTGGAAGCCGAG
GACGACTGGGAGGACCCAGAGGCCCTGAGCTCACTGCTGCTGTTCCTGAACGCCCCTGGGTACAAGGCCA
GCTTCCGTGGCCTGTACGATGTGGCGCTGCCGTGGCTGAGCAGCGTGTTCCGCAGCTTCAGCGACGAGGA
GGAGCTGACTGGGCGCCTGGCACAGGCCCGGGGGGCGGCCAAGAAAGCTGGCCTCCTCATGGCCCTGGCC
AGGCTCTGCTTCCTCCTGGGGCGGCTGTGCAGCAGGAGGCTCAAGCTGTCCCAGGCCCGGGTGTACTTTG
AGGAAGCGCTGGGGGCCCTGGAGGGCAGCTTCGGGGACCTGTTCCTAGTGGTGGCTGTGTACGCCAACCT
GGCCAGCATTTACCGGAAGCAGAAGAACCGGGAGAAGTGTGCACAGGTGGTGCCCAAAGCCATGGCCCTG
CTCCTGGGGACGCCTGACCACATCTGCAGCACCGAGGCGGAGGGGGAGCTCCTGCAGCTGGCGCTGCGGC
GGGCGGTGGGTGGCCAGAGCCTGCAGGCCGAGGCCCGGGCCTGCTTCCTGCTGGCCAGGCACCACGTGCA
CCTCAAGCAGCCCGAGGAGGCCCTGCCCTTCCTAGAGCGGCTGCTGCTTTTGCACAGGGACTCGGGAGCC
CCAGAGGCCGCGTGGCTCTCAGACTGCTACCTACTCCTGGCTGACATCTACAGCCGCAAGTGCCTGCCCC
ACCTGGTGCTGAGCTGTGTCAAGGTGGCCTCATTGCGGACACGGGGCTCGCTGGCCGGCTCGCTGAGGAG
TGTGAACCTGGTGCTCCAGAACGCCCCCCAGCCCCACAGCCTCCCTGCCCAAACTTCCCACTACCTCAGG
CAAGCGCTGGCCTCCCTGACCCCGGGCACAGGCCAGGCGCTGCGCGGCCCCCTCTACACCAGCTTGGCCC
AGCTGTACAGCCACCATGGCTGCCACGGCCCGGCCATCACCTTCATGACGCAGGCAGTGGAAGCCAGTGC
TATTGCCGGAGTCCGTGCCATCGTGGACCACCTGGTGGCCCTGGCCTGGCTGCACGTGCTTCATGGGCAG
AGCCCGGTGGCCCTGGACATCCTGCAGTCTGTCCGGGATGCAGTGGTGGCCAGCGAGGACCAGGAGGGCG
TGATTGCCAACATGGTGGCCGTGGCTCTGAAGAGGACGGGCCGGACGAGGCAGGCAGCTGAGAGCTACTA
CCGCGCCCTGCGGGTGGCTCGGGACCTGGGCCAGCAAAGGAACCAGGCAGTGGGGCTGGCCAACTTCGGG
GCCCTGTGCCTGCATGCGGGTGCCAGCAGGCTGGCCCAGCACTACCTCCTGGAGGCCGTGCGGCTGTTCT
CGAGGCTGCCCCTTGGGGAGTGTGGCCGGGACTTCACCCACGTGCTCCTGCAGCTGGGCCATCTCTGCAC
CCGCCAGGGCCCGGCCCAGCAGGGCAAGGGCTACTACGAGTGGGCCCTTCTGGTCGCCGTGGAGATGGGC
CACGTGGAGAGCCAGCTGCGGGCCGTCCAGCGGCTGTGCCACTTCTACAGCGCCGTCATGCCCAGCGAGG
CCCAGTGTGTCATCTACCATGAGCTCCAGCTCTCCCTGGCCTGCAAGGTGGCCGACAAGGTGCTGGAGGG
GCAGCTCCTGGAGACCATCAGCCAGCTCTACCTGTCCCTGGGCACCGAGCGGGCCTACAAATCCGCACTG
GACTACACCAAACGAAGTCTGGGGATTTTCATTGACCTCCAGAAGAAAGAGAAGGAGGCGCATGCCTGGC
TGCAAGCAGGGAAGATCTATTACATCTTGCGGCAGAGCGAGCTGGTGGACCTCTACATCCAGGTGGCACA
GAACGTGGCCCTGTACACAGGCGACCCCAACCTGGGGCTGGAGCTGTTTGAGGCGGCTGGAGACATCTTC
TTCGACGGGGCCTGGGAGCGGGAGAAAGCTGTGTCCTTCTACCGGGACCGGGCCCTGCCCCTGGCAGTGA
CTACGGGCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTGGCACTGCTGGCCACGCTGGAGGA
GCCCCAGGAGGGCTTGGAGTTTGCCCACATGGCCCTAGCACTCAGCATCACCCTGGGGGACCGGCTGAAC
GAGCGCGTGGCCTACCACCGGCTGGCCGCCCTGCAACACCGACTGGGCCATGGCGAGCTGGCAGAGCACT
TCTACCTCAAGGCCCTGTCGCTCTGCAACTCGCCGCTGGAGTTTGACGAGGAGACCCTCTACTACGTGAA
GGTGTACCTGGTGCTCGGTGACATCATCTTCTACGACCTGAAGGACCCGTTTGATGCAGCCGGGTACTAC
CAGCTGGCGCTGGCAGCCGCCGTGGACCTGGGCAACAAGAAGGCACAGCTGAAGATCTACACGCGGCTGG
CCACCATCTACCACAACTTCCTCCTGGACCGTGAGAAGTCGCTCTTCTTCTACCAGAAGGCCAGGACCTT
CGCCACAGAGCTCAACGTCCGCAGGGTCAACCTGCCTCCTCTGCCACTCTGCGGGTGGGCCCCCTGGTTG
GCCCCCAGCCACCCTCGCTGA

Translation (1336 aa):
MENLPAVTTEEPTPMGRGPVGPSGGGSTRDQVRTVVMRPSVSWEKAGPEEAKAPVRGDEAPPARVAGPAA
GTPPCQMGVYPTDLTLQLLAVRRKSRLRDPGLQQTLRGQLRLLENDSREMARVLGELSARLLSIHSDQDR
IVVTFKTFEEIWKFSTYHALGFTHHCLANLLMDQAFWLLLPSEEEETAIQVHVDENALRLTHESLLIQEG
PFFVLCPDHHVRVMTGPRDAGNGPQALRQASGAPQGEAAPETDSSPPSPSVSSEEVAVAAAPEPLIPFHQ
WALRIPQDPIDDAMGGPVMPGNPLMAVGLASALADFQGSGPEEMTFRGGDLIEILGAQVPSLPWCVGRHA
ASGRVGFVRSSLISMQGPVSELESAIFLNEEEKSFFSEGCFSEEDARQLLRRMSGTDVCSVYSLDSVEEA
ETEQPQEKEIPPPCLSLEPQETLQKVKNVLEQCKTCPGCPQEPASWGLCAASSDVSLQDPEEPSFCLEAE
DDWEDPEALSSLLLFLNAPGYKASFRGLYDVALPWLSSVFRSFSDEEELTGRLAQARGAAKKAGLLMALA
RLCFLLGRLCSRRLKLSQARVYFEEALGALEGSFGDLFLVVAVYANLASIYRKQKNREKCAQVVPKAMAL
LLGTPDHICSTEAEGELLQLALRRAVGGQSLQAEARACFLLARHHVHLKQPEEALPFLERLLLLHRDSGA
PEAAWLSDCYLLLADIYSRKCLPHLVLSCVKVASLRTRGSLAGSLRSVNLVLQNAPQPHSLPAQTSHYLR
QALASLTPGTGQALRGPLYTSLAQLYSHHGCHGPAITFMTQAVEASAIAGVRAIVDHLVALAWLHVLHGQ
SPVALDILQSVRDAVVASEDQEGVIANMVAVALKRTGRTRQAAESYYRALRVARDLGQQRNQAVGLANFG
ALCLHAGASRLAQHYLLEAVRLFSRLPLGECGRDFTHVLLQLGHLCTRQGPAQQGKGYYEWALLVAVEMG
HVESQLRAVQRLCHFYSAVMPSEAQCVIYHELQLSLACKVADKVLEGQLLETISQLYLSLGTERAYKSAL
DYTKRSLGIFIDLQKKEKEAHAWLQAGKIYYILRQSELVDLYIQVAQNVALYTGDPNLGLELFEAAGDIF
FDGAWEREKAVSFYRDRALPLAVTTGNRKAELRLCNKLVALLATLEEPQEGLEFAHMALALSITLGDRLN
ERVAYHRLAALQHRLGHGELAEHFYLKALSLCNSPLEFDEETLYYVKVYLVLGDIIFYDLKDPFDAAGYY
QLALAAAVDLGNKKAQLKIYTRLATIYHNFLLDREKSLFFYQKARTFATELNVRRVNLPPLPLCGWAPWL
APSHPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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