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Report for CCDS34020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34020.1 Public Homo sapiens 4 PAQR3 24 110 108 CCDS HistoryNCBI Gene:152559Re-query CCDS DB by CCDS ID:34020.1Re-query CCDS DB by GeneID:152559See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512733.5 ENSP00000421981.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000512733.5Link to Ensembl Protein Viewer:ENSP00000421981.1Re-query CCDS DB by Nucleotide ID:ENST00000512733Re-query CCDS DB by Protein ID:ENSP00000421981
Original member Current member EBI ENST00000511594.5 ENSP00000425080.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511594.5Link to Ensembl Protein Viewer:ENSP00000425080.1Re-query CCDS DB by Nucleotide ID:ENST00000511594Re-query CCDS DB by Protein ID:ENSP00000425080
Original member Current member NCBI NM_001040202.2 NP_001035292.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040202.2Link to Protein Sequence:NP_001035292.1Re-query CCDS DB by Nucleotide ID:NM_001040202Re-query CCDS DB by Protein ID:NP_001035292Link to BLAST:NP_001035292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035292.1 311 Q6TCH7-1 311 100% 0 0

Chromosomal Locations for CCDS 34020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 78920539 78920681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 78923857 78923947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 78926521 78926718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 78930170 78930325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 78935121 78935283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 78939040 78939224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCATCAGAAGCTGCTGAAGAGCGCGCATTACATCGAGCTGGGCAGCTACCAGTACTGGCCGGTCCTGG
TGCCCCGTGGCATCCGCCTGTACACCTACGAGCAGATCCCCGGGTCCCTCAAGGACAACCCGTACATCAC
CGACGGCTACCGGGCCTACCTGCCGTCCAGGCTGTGTATCAAAAGTTTGTTTATTTTATCTAATGAGACA
GTAAACATCTGGAGTCATTTGCTGGGTTTCTTTCTCTTCTTCACCCTGGGAATATATGACATGACATCTG
TGTTACCTTCAGCAAGTGCGTCCAGAGAAGATTTTGTAATTTGTTCTATTTGTCTTTTCTGCTTCCAGGT
CTGTATGCTTTGCTCTGTGGGCTATCATCTTTTTTCCTGCCATCGGTCAGAAAAAACATGTCGAAGATGG
ATGGCATTAGATTATGCAGGAATTTCTATTGGAATACTGGGCTGCTATGTCTCAGGAGTATTTTACGCAT
TTTATTGTAATAACTACTGGCGTCAGGTGTACTTGATCACAGTGCTTGCTATGATCCTGGCAGTGTTCTT
TGCGCAGATTCATCCCAATTACCTCACGCAGCAATGGCAAAGGCTCCGTTCTATCATCTTTTGTTCTGTT
TCGGGATATGGAGTGATTCCTACTCTTCACTGGGTTTGGCTCAATGGAGGAATTGGTGCTCCTATTGTAC
AGGACTTTGCACCCCGTGTAATTGTGATGTATATGATTGCTCTTCTTGCTTTCCTATTCTACATTTCCAA
AGTCCCAGAGCGGTACTTTCCAGGACAACTAAACTACCTCGGATCAAGCCACCAAATATGGCATATCCTT
GCAGTAGTGATGTTATATTGGTGGCATCAGTCAACAGTGTATGTCATGCAGTACAGACATAGCAAGCCTT
GTCCTGACTATGTTTCACATTTGTGA

Translation (311 aa):
MHQKLLKSAHYIELGSYQYWPVLVPRGIRLYTYEQIPGSLKDNPYITDGYRAYLPSRLCIKSLFILSNET
VNIWSHLLGFFLFFTLGIYDMTSVLPSASASREDFVICSICLFCFQVCMLCSVGYHLFSCHRSEKTCRRW
MALDYAGISIGILGCYVSGVFYAFYCNNYWRQVYLITVLAMILAVFFAQIHPNYLTQQWQRLRSIIFCSV
SGYGVIPTLHWVWLNGGIGAPIVQDFAPRVIVMYMIALLAFLFYISKVPERYFPGQLNYLGSSHQIWHIL
AVVMLYWWHQSTVYVMQYRHSKPCPDYVSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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