NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34267.1 Public Homo sapiens 5 C5orf46 24 110 108 CCDS HistoryNCBI Gene:389336Re-query CCDS DB by CCDS ID:34267.1Re-query CCDS DB by GeneID:389336See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34267.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318315.5 ENSP00000315370.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318315.5Link to Ensembl Protein Viewer:ENSP00000315370.4Re-query CCDS DB by Nucleotide ID:ENST00000318315Re-query CCDS DB by Protein ID:ENSP00000315370
Original member Current member NCBI NM_206966.3 NP_996849.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_206966.3Link to Protein Sequence:NP_996849.2Re-query CCDS DB by Nucleotide ID:NM_206966Re-query CCDS DB by Protein ID:NP_996849Link to BLAST:NP_996849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996849.2 87 Q6UWT4-1 87 100% 0 0

Chromosomal Locations for CCDS 34267.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147896993 147897041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147901629 147901773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147906432 147906501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGGCTGTCTCAGTACTTCGCCTGACAGTTGTCCTGGGACTGCTTGTCTTATTCCTGACCTGCTATGCAG
ACGACAAACCAGACAAGCCAGACGACAAGCCAGACGACTCGGGCAAAGACCCAAAGCCAGACTTCCCCAA
ATTCCTAAGCCTCCTGGGCACAGAGATCATTGAGAATGCAGTCGAGTTCATCCTCCGCTCCATGTCCAGG
AGCACAGGATTTATGGAATTTGATGATAATGAAGGAAAACATTCATCAAAGTGA

Translation (87 aa):
MAVSVLRLTVVLGLLVLFLTCYADDKPDKPDDKPDDSGKDPKPDFPKFLSLLGTEIIENAVEFILRSMSR
STGFMEFDDNEGKHSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH