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Report for CCDS3503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3503.1 Public Homo sapiens 4 EXOC1 24 110 108 CCDS HistoryNCBI Gene:55763Re-query CCDS DB by CCDS ID:3503.1Re-query CCDS DB by GeneID:55763See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3503.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349598.6 ENSP00000334431.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349598.6Link to Ensembl Protein Viewer:ENSP00000334431.6Re-query CCDS DB by Nucleotide ID:ENST00000349598Re-query CCDS DB by Protein ID:ENSP00000334431
Original member Current member NCBI NM_178237.3 NP_839955.1 Accepted alive Link to Nucleotide Sequence:NM_178237.3Link to Protein Sequence:NP_839955.1Re-query CCDS DB by Nucleotide ID:NM_178237Re-query CCDS DB by Protein ID:NP_839955Link to BLAST:NP_839955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839955.1 879 Q9NV70-2 879 100% 0 0

Chromosomal Locations for CCDS 3503.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 55858324 55858447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55860411 55860541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55864227 55864386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55868336 55868523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55870678 55870905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55871101 55871233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55871849 55871958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55877917 55878066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55883823 55883928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55890223 55890386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55891315 55891422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55892635 55892711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55893552 55893780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55896717 55896900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55899685 55899884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55902344 55902538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55904343 55904495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2640 nt):
ATGACAGCAATCAAGCATGCATTACAAAGAGACATTTTTACACCAAATGATGAACGCCTGCTGAGCATTG
TGAATGTCTGCAAAGCAGGAAAAAAGAAAAAGAACTGTTTTTTATGTGCCACAGTGACAACTGAACGCCC
TGTGCAGGTTAAGGTGGTCAAAGTCAAGAAATCCGATAAGGGAGATTTCTACAAAAGGCAGATTGCATGG
GCCCTTCGAGATCTTGCTGTGGTAGATGCCAAAGATGCTATCAAAGAAAATCCTGAATTTGATTTACACT
TTGAAAAAATATATAAATGGGTTGCCAGCAGCACTGCTGAAAAGAATGCATTTATTTCATGCATTTGGAA
ATTGAATCAGCGATATCTCCGGAAGAAAATTGATTTTGTCAATGTTAGCTCACAGCTTTTGGAAGAATCT
GTTCCAAGTGGAGAAAATCAGAGTGTGACAGGAGGTGATGAAGAAGTAGTAGATGAATACCAAGAGTTAA
ATGCAAGAGAAGAACAGGATATCGAAATAATGATGGAAGGCTGTGAATATGCAATCTCGAATGCGGAAGC
CTTTGCAGAAAAATTGTCCAGAGAGCTGCAGGTGCTAGATGGGGCTAACATCCAGTCAATCATGGCATCT
GAAAAACAAGTCAACATCCTGATGAAATTGCTAGATGAGGCTCTAAAGGAGGTAGATCAGATTGAATTGA
AACTGAGCAGTTATGAGGAAATGCTCCAAAGTGTAAAAGAACAAATGGATCAGATCTCTGAAAGCAACCA
CCTAATTCATCTTAGTAACACTAATAATGTAAAACTCCTATCTGAGATAGAGTTCCTTGTGAACCACATG
GACTTGGCCAAAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGCTTCTTCCAGAGGCATTGAGGCCT
GCACCAATGCTGCTGATGCCCTTCTGCAGTGCATGAATGTAGCTCTTCGACCAGGCCATGACTTGCTTCT
GGCAGTCAAACAGCAACAGCAGCGATTCAGTGATTTGCGAGAGCTTTTTGCCCGGAGACTGGCCAGTCAC
CTCAACAATGTTTTTGTTCAACAGGGTCATGATCAGAGTTCGACTCTTGCCCAACACTCTGTTGAACTGA
CTTTACCCAATCATCATCCATTTCATAGAGATTTGCTCCGATATGCCAAGCTGATGGAGTGGCTAAAGAG
TACAGATTATGGAAAATATGAAGGACTAACAAAGAATTACATGGATTATTTATCCCGACTATATGAAAGA
GAAATCAAAGATTTCTTTGAAGTTGCAAAGATCAAGATGACTGGCACAACTAAAGAAAGCAAGAAGTTTG
GTCTTCATGGAAGTTCGGGGAAATTAACTGGATCTACTTCTAGTCTAAATAAGCTCAGTGTTCAGAGTTC
AGGGAATCGCAGATCTCAGTCATCTTCCCTGTTGGATATGGGAAACATGTCTGCCTCTGATCTCGATGTT
GCTGACAGGACCAAATTTGATAAGATCTTTGAACAGGTACTAAGTGAACTGGAGCCCCTATGTCTGGCAG
AACAGGACTTCATAAGTAAATTTTTCAAACTACAGCAACATCAAAGTATGCCTGGAACTATGGCTGAAGC
AGAGGACCTGGATGGAGGAACATTATCACGGCAACATAATTGTGGCACACCACTGCCTGTTTCATCTGAG
AAAGATATGATCCGCCAAATGATGATTAAAATATTTCGCTGCATTGAGCCAGAGCTGAACAACCTAATTG
CATTAGGAGACAAAATTGATAGCTTTAACTCTCTTTATATGTTAGTCAAAATGAGTCATCATGTGTGGAC
TGCACAAAATGTGGACCCTGCTTCTTTCCTAAGTACTACATTGGGAAATGTTTTGGTGACTGTCAAAAGG
AACTTTGACAAATGCATTAGTAACCAAATAAGGCAAATGGAAGAAGTAAAGATCTCAAAAAAGAGTAAAG
TTGGAATTCTTCCATTTGTTGCTGAATTTGAAGAATTTGCTGGACTTGCAGAATCAATCTTCAAAAATGC
TGAGCGTCGTGGAGACCTGGATAAAGCATACACCAAACTTATCAGAGGAGTATTTGTTAATGTGGAGAAA
GTAGCAAATGAAAGCCAGAAGACCCCCAGGGATGTGGTTATGATGGAAAACTTTCACCATATTTTTGCAA
CTCTTTCTCGATTGAAAATCTCATGTCTAGAAGCAGAAAAAAAAGAAGCCAAACAAAAATACACAGATCA
CCTTCAGTCTTATGTCATTTACTCTTTAGGACAACCTCTTGAAAAACTAAATCATTTCTTTGAAGGTGTT
GAAGCTCGCGTGGCACAGGGCATAAGGGAGGAGGAAGTAAGTTACCAACTTGCATTTAACAAACAAGAAC
TTCGTAAAGTCATTAAGGAGTACCCTGGAAAGGAAGTAAAAAAAGGTCTAGATAACCTCTACAAGAAAGT
TGATAAACATTTATGTGAAGAAGAGAACTTACTTCAGGTGGTGTGGCACTCCATGCAAGATGAATTTATA
CGCCAGTATAAGCACTTTGAAGGTTTGATAGCTCGCTGTTATCCTGGATCTGGTGTTACAATGGAATTCA
CTATTCAGGACATTCTGGATTATTGTTCCAGCATTGCACAGTCCCACTAA

Translation (879 aa):
MTAIKHALQRDIFTPNDERLLSIVNVCKAGKKKKNCFLCATVTTERPVQVKVVKVKKSDKGDFYKRQIAW
ALRDLAVVDAKDAIKENPEFDLHFEKIYKWVASSTAEKNAFISCIWKLNQRYLRKKIDFVNVSSQLLEES
VPSGENQSVTGGDEEVVDEYQELNAREEQDIEIMMEGCEYAISNAEAFAEKLSRELQVLDGANIQSIMAS
EKQVNILMKLLDEALKEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLVNHM
DLAKGHIKALQEGDLASSRGIEACTNAADALLQCMNVALRPGHDLLLAVKQQQQRFSDLRELFARRLASH
LNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLKSTDYGKYEGLTKNYMDYLSRLYER
EIKDFFEVAKIKMTGTTKESKKFGLHGSSGKLTGSTSSLNKLSVQSSGNRRSQSSSLLDMGNMSASDLDV
ADRTKFDKIFEQVLSELEPLCLAEQDFISKFFKLQQHQSMPGTMAEAEDLDGGTLSRQHNCGTPLPVSSE
KDMIRQMMIKIFRCIEPELNNLIALGDKIDSFNSLYMLVKMSHHVWTAQNVDPASFLSTTLGNVLVTVKR
NFDKCISNQIRQMEEVKISKKSKVGILPFVAEFEEFAGLAESIFKNAERRGDLDKAYTKLIRGVFVNVEK
VANESQKTPRDVVMMENFHHIFATLSRLKISCLEAEKKEAKQKYTDHLQSYVIYSLGQPLEKLNHFFEGV
EARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKVDKHLCEEENLLQVVWHSMQDEFI
RQYKHFEGLIARCYPGSGVTMEFTIQDILDYCSSIAQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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