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Report for CCDS35100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35100.1 Public Homo sapiens 9 PALM2AKAP2 24 110 108 CCDS HistoryNCBI Gene:445815Re-query CCDS DB by CCDS ID:35100.1Re-query CCDS DB by GeneID:445815See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374530.8 ENSP00000363654.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374530.8Link to Ensembl Protein Viewer:ENSP00000363654.3Re-query CCDS DB by Nucleotide ID:ENST00000374530Re-query CCDS DB by Protein ID:ENSP00000363654
Original member Current member NCBI NM_007203.5 NP_009134.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007203.5Link to Protein Sequence:NP_009134.1Re-query CCDS DB by Nucleotide ID:NM_007203Re-query CCDS DB by Protein ID:NP_009134Link to BLAST:NP_009134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009134.1 1103 Q9Y2D5-4 1103 100% 0 0

Chromosomal Locations for CCDS 35100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109780489 109780533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109867491 109867571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109880551 109880681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109923735 109923849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109925061 109925082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109931927 109932028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110015954 110016039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110136127 110138539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110156319 110156497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110162094 110162132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110168399 110168497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3312 nt):
ATGGCAGAGGCGGAATTGCACAAGGAAAGGCTGCAAGCCATAGCAGAAAAAAGAAAGAGGCAGACTGAAA
TAGAAGGCAAGCGACAACAGCTTGACGAGCAGATACTTCTGCTGCAGCATTCCAAGTCCAAAGTGCTTCG
GGAGAAATGGCTGCTGCAGGGCATACCCGCTGGAACTGCCGAAGAGGAGGAAGCCAGGAGGCGGCAGTCT
GAAGAGGATGAGTTCAGAGTCAAGCAACTTGAAGATAACATTCAGAGGCTGGAGCAAGAAATACAAACGC
TAGAAAGTGAAGAGTCCCAGATATCTGCCAAAGAGCAAATCATCCTAGAGAAACTGAAGGAAACAGAAAA
ATCCTTCAAGGACTTTCAGAAGGGTTTCTCCAGTACGGATGGAGATGCAGTAAATTACATTTCCTCCCAG
CTTCCCGACCTGCCAATCCTCTGTTCACGAACAGCAGAACCATCACCTGGGCAGGACGGGACCAGCAGAG
CGGCTGGAGTCGGGTGGGAGAATGTGCTGCTAAAGGAAGGTGAGTCAGCCTCGAACGCCACAGAAACATC
CGGCCCAGACATGACTATCAAGAAGCCTCCCCAGCTTTCTGAGGATGATATCTGGCTAAAAAGCGAGGGA
GACAACTATAGTGCCACCCTCCTGGAGCCTGCTGCCAGCTCTCTTTCCCCAGATCACAAAAACATGGAAA
TTGAGGTGTCTGTTGCAGAATGTAAAAGTGTTCCTGGAATCACCTCTACCCCACATCCCATGGACCATCC
CTCCGCTTTCTATTCACCCCCGCATAATGGCCTCCTTACTGATCACCACGAATCCCTGGATAATGATGTT
GCCAGAGAGATCCGCTATCTAGATGAGGTGCTAGAGGCCAACTGCTGTGATTCTGCTGTGGATGGAACGT
ACAATGGAACATCCTCCCCAGAGCCTGGTGCAGTGGTTCTGGTGGGCGGCCTAAGCCCCCCTGTCCACGA
GGCGACCCAGCCAGAACCCACTGAAAGAACAGCTAGCCGGCAGGCACCTCCTCACATCGAGCTCAGTAAT
AGCAGCCCTGACCCCATGGCAGAGGCAGAAAGAACAAATGGCCATTCCCCCAGCCAGCCTAGAGATGCGC
TGGGGGACAGCCTGCAGGTGCCTGTCAGCCCCAGCTCCACAACCAGCTCACGGTGTTCTTCCCGAGATGG
AGAGTTCACTCTCACCACACTGAAAAAGGAGGCCAAGTTTGAGCTGCGTGCCTTCCATGAGGACAAGAAG
CCCTCCAAGCTCTTTGAGGATGACGAGCATGAGAAAGAACAATACTGCATTAGAAAAGTGAGGCCTTCAG
AGGAGATGCTGGAGCTGGAAAAGGAGAGGAGAGAGCTCATCCGCAGCCAGGCCGTCAAGAAGAATCCTGG
CATTGCAGCAAAATGGTGGAATCCCCCGCAGGAAAAAACCATCGAGGAGCAGCTGGACGAGGAACATCTG
GAGTCGCACAAAAAGTACAAGGAGCGCAAAGAGAGAAGGGCACAGCAGGAACAGTTGCTGCTGCAGAAGC
AGTTACAGCAGCAGCAGCAGCAGCCCCCATCGCAGCTCTGCACAGCCCCTGCCTCTTCTCATGAACGCGC
AAGCATGATTGACAAAGCAAAGGAGGACATTGTCACAGAGCAGATAGATTTCTCTGCTGCTCGCAAACAA
TTTCAGCTGATGGAGAATTCCAGGCAAGCGGTGGCCAAGGGCCAGAGTACACCCAGGCTGTTCTCCATCA
AGCCTTTCTACAGGCCTCTGGGGTCAGTCAACTCAGACAAGCCACTGACTAATCCGAGACCACCTTCTGT
CGGGGGACCTCCAGAAGACAGTGGTGCCTCAGCCGCCAAGGGACAGAAATCCCCCGGTGCCCTGGAGACC
CCATCGGCAGCAGGAAGCCAGGGCAACACAGCCTCTCAGGGGAAGGAAGGGCCCTACAGCGAGCCTTCTA
AACGTGGGCCCTTATCTAAACTGTGGGCTGAGGATGGAGAATTTACGAGCGCCCGGGCTGTCCTCACTGT
GGTCAAGGATGATGACCATGGGATTTTGGATCAGTTCTCAAGATCTGTCAATGTCTCCTTGACCCAAGAG
GAGCTTGACTCTGGTCTGGACGAATTGTCGGTGAGGTCTCAGGATACCACAGTCCTGGAGACCCTATCCA
ATGATTTCAGCATGGACAACATCAGTGACAGCGGGGCATCCAATGAGACAACCAATGCCCTCCAGGAAAA
TTCACTGGCTGATTTTTCTCTGCCCCAGACACCACAAACTGACAACCCCTCAGAGGGCCGAGGAGAAGGC
GTCTCCAAGTCATTTAGTGATCATGGTTTCTATTCCCCTTCCTCCACGCTGGGGGACTCTCCGTTGGTTG
ATGACCCCTTGGAGTATCAGGCTGGCCTCCTGGTGCAGAATGCCATTCAACAAGCCATAGCCGAGCAGGT
GGATAAAGCTGTGTCCAAAACCAGCAGGGATGGAGCAGAGCAACAGGGACCTGAAGCGACTGTAGAGGAA
GCTGAAGCTGCGGCTTTCGGCTCAGAAAAGCCTCAGAGCATGTTTGAGCCACCTCAGGTGTCTTCTCCTG
TTCAAGAGAAAAGGGATGTATTACCAAAGATTCTGCCTGCTGAAGACAGGGCGCTCAGGGAAAGGGGGCC
CCCCCAGCCACTGCCAGCTGTGCAGCCCAGTGGCCCGATTAACATGGAGGAGACCAGGCCCGAAGGAAGC
TATTTCAGCAAGTACTCGGAGGCAGCTGAGCTGAGAAGCACAGCCTCCCTCCTGGCCACTCAAGAATCTG
ACGTGATGGTTGGGCCTTTCAAGCTGAGGTCCAGGAAACAGCGGACTTTGTCCATGATTGAGGAAGAGAT
CCGAGCAGCTCAGGAAAGGGAAGAGGAGCTGAAGAGGCAGAGACAAGTCTTGCAGAGTACGCAGAGCCCC
AGGACAAAGAATGCCCCATCACTGCCCTCCAGAACATGCTACAAAACTGCTCCAGGGAAAATAGAGAAAG
TCAAACCTCCTCCATCCCCCACCACTGAAGGCCCCAGCTTGCAGCCTGACTTAGCCCCTGAAGAGGCTGC
CGGAACCCAGCGGCCCAAGAATCTGATGCAGACCCTCATGGAAGACTATGAGACACACAAATCTAAAAGG
CGCGAGAGAATGGATGATAGTAGTTACACTTCTAAGTTACTGTCTTGCAAGGTGACTTCCGAGGTCCTCG
AGGCCACACGGGTTAATCGAAGAAAGAGCGCACTGGCTTTGCGCTGGGAAGCAGGGATCTATGCCAACCA
GGAGGAAGAAGACAACGAATAA

Translation (1103 aa):
MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPAGTAEEEEARRRQS
EEDEFRVKQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFKDFQKGFSSTDGDAVNYISSQ
LPDLPILCSRTAEPSPGQDGTSRAAGVGWENVLLKEGESASNATETSGPDMTIKKPPQLSEDDIWLKSEG
DNYSATLLEPAASSLSPDHKNMEIEVSVAECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDV
AREIRYLDEVLEANCCDSAVDGTYNGTSSPEPGAVVLVGGLSPPVHEATQPEPTERTASRQAPPHIELSN
SSPDPMAEAERTNGHSPSQPRDALGDSLQVPVSPSSTTSSRCSSRDGEFTLTTLKKEAKFELRAFHEDKK
PSKLFEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDEEHL
ESHKKYKERKERRAQQEQLLLQKQLQQQQQQPPSQLCTAPASSHERASMIDKAKEDIVTEQIDFSAARKQ
FQLMENSRQAVAKGQSTPRLFSIKPFYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKGQKSPGALET
PSAAGSQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDDDHGILDQFSRSVNVSLTQE
ELDSGLDELSVRSQDTTVLETLSNDFSMDNISDSGASNETTNALQENSLADFSLPQTPQTDNPSEGRGEG
VSKSFSDHGFYSPSSTLGDSPLVDDPLEYQAGLLVQNAIQQAIAEQVDKAVSKTSRDGAEQQGPEATVEE
AEAAAFGSEKPQSMFEPPQVSSPVQEKRDVLPKILPAEDRALRERGPPQPLPAVQPSGPINMEETRPEGS
YFSKYSEAAELRSTASLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVLQSTQSP
RTKNAPSLPSRTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLMEDYETHKSKR
RERMDDSSYTSKLLSCKVTSEVLEATRVNRRKSALALRWEAGIYANQEEEDNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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