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Report for CCDS35519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35519.1 Public Mus musculus 1 Crispld1 23 108 98 CCDS HistoryNCBI Gene:83691Re-query CCDS DB by CCDS ID:35519.1Re-query CCDS DB by GeneID:83691See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095075.4 ENSMUSP00000092686.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095075.4Link to Ensembl Protein Viewer:ENSMUSP00000092686.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095075Re-query CCDS DB by Protein ID:ENSMUSP00000092686
Original member Current member EBI ENSMUST00000159958.7 ENSMUSP00000124095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159958.7Link to Ensembl Protein Viewer:ENSMUSP00000124095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159958Re-query CCDS DB by Protein ID:ENSMUSP00000124095
Original member NCBI NM_001356551.1 NP_001343480.1 Updated not alive Link to Nucleotide Sequence:NM_001356551.1Link to Protein Sequence:NP_001343480.1Re-query CCDS DB by Nucleotide ID:NM_001356551Re-query CCDS DB by Protein ID:NP_001343480
Current member NCBI NM_001356551.2 NP_001343480.1 Accepted alive Link to Nucleotide Sequence:NM_001356551.2Link to Protein Sequence:NP_001343480.1Re-query CCDS DB by Nucleotide ID:NM_001356551Re-query CCDS DB by Protein ID:NP_001343480Link to BLAST:NP_001343480.1
Original member NCBI NM_031402.2 NP_113579.2 Updated not alive Link to Nucleotide Sequence:NM_031402.2Link to Protein Sequence:NP_113579.2Re-query CCDS DB by Nucleotide ID:NM_031402Re-query CCDS DB by Protein ID:NP_113579
Current member NCBI NM_031402.3 NP_113579.2 Accepted alive Link to Nucleotide Sequence:NM_031402.3Link to Protein Sequence:NP_113579.2Re-query CCDS DB by Nucleotide ID:NM_031402Re-query CCDS DB by Protein ID:NP_113579Link to BLAST:NP_113579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343480.1 500 Q8CGD2 500 100% 0 0
NP_113579.2 500 Q8CGD2 500 100% 0 0

Chromosomal Locations for CCDS 35519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 17728657 17728914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17745354 17745472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17745780 17745912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17746731 17746846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17747501 17747601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17749507 17749647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17750265 17750325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17750434 17750500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17750734 17750864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17752838 17752881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17752968 17753040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17756258 17756333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17762112 17762242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17764063 17764114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGATGTGTAAGGCACAGGAGTGGCTCAGAGTGACCGCACTGCTATTTGTGGCTAGAGCAGTTCCAGCTA
TGGTGGTTCCTAATGCCACTTTGCTGGAGAAACTTTTGGAAAAATACATGGATGAGGATGGTGAATGGTG
GACAGCTAAGCAAAGAGGGAAAAGAGCCATCACAGACAATGATATGCAGAGCATCTTGGATCTCCATAAT
AAACTGAGAAGTCAGGTGTACCCAACAGCTTCTAATATGGAGTATATGACATGGGATGTGGAGCTGGAAA
GATCTGCAGAATCCTGGGCTGAAATGTGTTTGTGGGAACATGGCCCCGCGAGCCTGCTGCCCTCCATTGG
ACAGAATTTGGGGGCACACTGGGGAAGATACCGACCCCCAACCTTTCATGTACAAGCATGGTATGATGAA
GTGAGAGACTTTAGCTACCCATATGAAAATGAGTGTGACCCTTACTGTCCTTTCAGATGTTCTGGCCCTG
TTTGTACACACTACACTCAGGTGGTGTGGGCTACTAGTAGCAGAATAGGCTGTGCCGTCAATCTGTGCCA
CAACATGAACATCTGGGGGCAGATATGGCCCAAGGCAGTCTACTTGGTGTGCAATTACTCCCCCAAGGGA
AACTGGTGGGGCCACGCACCTTACAAACATGGAAGGCCTTGTTCTGCTTGCCCACCCAGTTTTGGAGGAG
GCTGTAGAGAAAACTTGTGCTACAAAGAAGGGTCAGACAGGTATTATACCCCTCGAGAAGAAGAAACAAA
TGAAATTGAACGGCAGCAGTCTCAGGTCCATGACACCCATGTTCGAACAAGATCAGATGACAGTGACAGA
AATGACGTCATCAGCACTCAGCAGATGTCTCAGATTGTTTCTTGTGAAGTAAGATTGAGAGACCAGTGTA
AAGGGACCACCTGCAACAGGTATGAGTGCCCTGCAGGCTGCTTGGACAGTAAAGCTAAAGTAATTGGGAG
TGTACATTATGAAATGCAATCCAGTATCTGCCGAGCTGCCATCCACTATGGGATAATAGACAATGAAGGT
GGGTGGGTAGATGTCACTCGACAAGGGAGAAAGCATTACTTCATCAAATCCAACAGAAATGGCATTCAAA
CAATTGGAAAATATCATTCTGCTAATTCCTTCACAGTCTCCAAAGTTACAGTTCAAGCTGTGACCTGTGA
AACTACAGTGGAACAGCTCTGTCCATTCCATAAGCCTGCTTCTCATTGCCCCAGAGTGTACTGTCCTCGA
AACTGTATGCAGTCAAATCCACATTATGCTCGTGTAATCGGGACCAGAATTTATTCTGATCTGTCTAGTA
TCTGCAGAGCAGCGGTGCATGCTGGGGTGGTTCGAAATCATGGTGGTTATGTGGATGTCATGCCTGTGGA
TAAAAGAAAGATGTACACTGCTTCTTTTCAGAATGGAATATTCTCAGAAAGTTTACAGAACCCTACAGGA
GGAAAGGCATTCCGTGTATTCGCTGTTGTTTGA

Translation (500 aa):
MMCKAQEWLRVTALLFVARAVPAMVVPNATLLEKLLEKYMDEDGEWWTAKQRGKRAITDNDMQSILDLHN
KLRSQVYPTASNMEYMTWDVELERSAESWAEMCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQAWYDE
VRDFSYPYENECDPYCPFRCSGPVCTHYTQVVWATSSRIGCAVNLCHNMNIWGQIWPKAVYLVCNYSPKG
NWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDRYYTPREEETNEIERQQSQVHDTHVRTRSDDSDR
NDVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEG
GWVDVTRQGRKHYFIKSNRNGIQTIGKYHSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPR
NCMQSNPHYARVIGTRIYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKMYTASFQNGIFSESLQNPTG
GKAFRVFAVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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