NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35696.1 Public Mus musculus 1 Tmem163 23 108 98 CCDS HistoryNCBI Gene:72160Re-query CCDS DB by CCDS ID:35696.1Re-query CCDS DB by GeneID:72160See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027585.13 ENSMUSP00000027585.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027585.13Link to Ensembl Protein Viewer:ENSMUSP00000027585.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027585Re-query CCDS DB by Protein ID:ENSMUSP00000027585
Original member Current member EBI ENSMUST00000160616.7 ENSMUSP00000124307.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160616.7Link to Ensembl Protein Viewer:ENSMUSP00000124307.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160616Re-query CCDS DB by Protein ID:ENSMUSP00000124307
Original member Current member EBI ENSMUST00000185560.1 ENSMUSP00000140828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185560.1Link to Ensembl Protein Viewer:ENSMUSP00000140828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185560Re-query CCDS DB by Protein ID:ENSMUSP00000140828
Original member Current member NCBI NM_028135.2 NP_082411.1 Accepted alive Link to Nucleotide Sequence:NM_028135.2Link to Protein Sequence:NP_082411.1Re-query CCDS DB by Nucleotide ID:NM_028135Re-query CCDS DB by Protein ID:NP_082411Link to BLAST:NP_082411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082411.1 288 Q8C996 288 100% 0 0

Chromosomal Locations for CCDS 35696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 127491600 127491660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127495718 127495859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127500184 127500295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127519345 127519441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127551326 127551417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127552761 127552804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127668651 127668770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127677431 127677629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGAGCCGGCTCTGGGCAGCGAGCGCCGCAGCCCCCCTGGCCCCGGAGTCCCGCGGCCGCCACCGCGGG
GCCACGCGCCCTCGACCGCCGCCCCCGCCCCCAGCCCGGCTCCGATGAGCTCCTCTGTGCAGTCTGATGA
GGAAAGGCAGCCACGGATCAGCGAGAGCGGCCAGTTCAGCGACGGGTTGGAAGACCGAGGTTTACTAGAA
AGCAGCACCCGGCTGAAACCTCATGAAGCCCAGAACTACAGGAAGAAGGCATTGTGGGTATCCTGGCTGT
CCATTATTGTCACCCTGGCCCTGGCAGTGGCCGCCTTCACTGTCTCCGTCATGAGGTACAGCGCCTCTGC
CTTCGGGTTTGCATTTGATGCCATCCTGGATGTGCTGTCCTCGGCCATTGTCCTCTGGCGTTACAGCAAT
GCGGCTGCTGTGCACTCTGCAAACAGGGAGTATATAGCCTGTGTCATCTTGGGGGTGATCTTTCTTCTGT
CATCTATATGCATAGTGGTCAAAGCCATCCATGACCTCTCAACTAGGCTGCTCCCTGAAGTGGATGATTT
CCTGTTCAGCGTCTCCATTCTAAGCGGGATCCTTTGCAGCGTACTGGCTGTGCTGAAGTTTATGCTGGGG
AAGGTCCTGACAAGCAGGGCTCTCATCACAGACGGGTTCAACTCCCTTGTTGGGGGCGTGATGGGCTTCT
CCATCCTTCTAAGTGCAGAAGTGTTCAAACACAACGCAGCAGTCTGGTACCTGGACGGCAGCATTGGTGT
CCTGATTGGTCTCACCATCTTTGCCTACGGGGTCAAACTCCTCATCGACATGGTGCCCAGAGTGAGACAG
ACGCGTCATTATGAAATGTTTGAGTGA

Translation (288 aa):
MEPALGSERRSPPGPGVPRPPPRGHAPSTAAPAPSPAPMSSSVQSDEERQPRISESGQFSDGLEDRGLLE
SSTRLKPHEAQNYRKKALWVSWLSIIVTLALAVAAFTVSVMRYSASAFGFAFDAILDVLSSAIVLWRYSN
AAAVHSANREYIACVILGVIFLLSSICIVVKAIHDLSTRLLPEVDDFLFSVSILSGILCSVLAVLKFMLG
KVLTSRALITDGFNSLVGGVMGFSILLSAEVFKHNAAVWYLDGSIGVLIGLTIFAYGVKLLIDMVPRVRQ
TRHYEMFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH