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Report for CCDS35791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35791.1 Public Mus musculus 1 Ifi209 23 108 98 CCDS HistoryNCBI Gene:236312Re-query CCDS DB by CCDS ID:35791.1Re-query CCDS DB by GeneID:236312See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35791.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056071.12 ENSMUSP00000061900.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056071.12Link to Ensembl Protein Viewer:ENSMUSP00000061900.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056071Re-query CCDS DB by Protein ID:ENSMUSP00000061900
Original member Current member NCBI NM_175026.3 NP_778191.1 Accepted alive Link to Nucleotide Sequence:NM_175026.3Link to Protein Sequence:NP_778191.1Re-query CCDS DB by Nucleotide ID:NM_175026Re-query CCDS DB by Protein ID:NP_778191Link to BLAST:NP_778191.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778191.1 420 Q8BV49 420 100% 0 0

Chromosomal Locations for CCDS 35791.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173637306 173637567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173638866 173639002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173641005 173641244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173642487 173642900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173644648 173644836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173645991 173646011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGTGAATGAATACAAGAGAATTGTTCTTCTGACAGGATTAATGGGTATTAATGACCATGATTTTAGAA
TGGTTAAGTCCTTGTTGAGCAAAGAACTAAAACTAAATAGAATGCAAGATCAGTACGACAGAGTTAAGAT
TGCTGATTTGATGGAAGACAAGTTCCCAAAAGATGCTGGAGTGGACCAACTGATAAAACTATATAAGCAG
ATTCCAGGACTTGGAGACATTGCTAATAAACTCAAAAATGAGAAGGCAAAAGCTAAAAGGACACGGACAG
GGAAACGGAAAACCGCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACTTCCCAACCTATGTCCACCAC
AAATGAAGATGCAGAACCAGAATCAGGGAGGAGTACACCTGACACACAGGTTGCTCAGTTATCTTTACCA
ACTGCTTCCCGAAGGAACCAAGCCATTCAAATTTCTCCAACAATAGCATCCAGCAGTGGTCAGACCAGCA
GCAGATCTTCAGAAACATTACAAAGCATCATTCAGTCCCCCAAAACTCCAAAAAGACCGTCCAGCAGTAT
TCTGGACCCTCCAGTGTCTTCAGGAACAGCATCCAGCAGTGCCCAGGCACTAGGAGTTCCTCTAGCAACA
ATAGCCAAGAGACAGAGACTGAAAAATGTACCCAAAGAACCTTCTGAGGAAAATGGTCACCAGCAAGGTT
CCAAAAAAGTGATGGTGTTAAAAGTAACAGAACCATTTTCATATGACGTGACAGAAGAGAAGATGTTCCA
TGCCACCGTGGCTACGGAAACAGAATTCTTTAGAGTAAAGGTGTTTGACATTGTCCTGAAGGAGAAGTTC
ATACCAAATAAGGTCCTTACCATCTCAAACTATGTTGGCTGCAATGGGTTCATAAATATATACAGTGCAT
CTAGTGTGTCAGAGGTAAATGATGGCGAACCAATGAATATCCCACTTTCACTGAGGAAAAGTGCCAATCG
AACACCTAAAATCAACTATCTTTGCTCGAAGAAAAGAGGAATATTTGTGAATGGAGTGTTTACTGTATGT
AAGAAAGAAGAAAAGTGGAACTACATTTGCTATGAGATAGGAGATGATACAGGGATGATGGAAGTGGAGG
TCTACGGACGACTGACCAATATTGCTTGTAATCCTGGAGATAAACTTAGACTCATATGCTTTAAACTGAT
CCCAGATGAAGAAAAAGCACAGCTGAGATCTACAACACACAGTAACATGCAGGTTATCAAAGCTAAGAAT
TGA

Translation (420 aa):
MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNRMQDQYDRVKIADLMEDKFPKDAGVDQLIKLYKQ
IPGLGDIANKLKNEKAKAKRTRTGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLP
TASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPKTPKRPSSSILDPPVSSGTASSSAQALGVPLAT
IAKRQRLKNVPKEPSEENGHQQGSKKVMVLKVTEPFSYDVTEEKMFHATVATETEFFRVKVFDIVLKEKF
IPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKKRGIFVNGVFTVC
KKEEKWNYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLICFKLIPDEEKAQLRSTTHSNMQVIKAKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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