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Report for CCDS35954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35954.1 Public Mus musculus 10 Cfap410 23 108 98 CCDS HistoryNCBI Gene:67884Re-query CCDS DB by CCDS ID:35954.1Re-query CCDS DB by GeneID:67884See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105397.9 ENSMUSP00000101036.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105397.9Link to Ensembl Protein Viewer:ENSMUSP00000101036.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105397Re-query CCDS DB by Protein ID:ENSMUSP00000101036
Original member Current member NCBI NM_026431.2 NP_080707.2 Accepted alive Link to Nucleotide Sequence:NM_026431.2Link to Protein Sequence:NP_080707.2Re-query CCDS DB by Nucleotide ID:NM_026431Re-query CCDS DB by Protein ID:NP_080707Link to BLAST:NP_080707.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080707.2 249 Q8C6G1 249 100% 0 0

Chromosomal Locations for CCDS 35954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77978705 77978781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77979753 77979771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77980501 77980547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77981584 77981813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77982870 77983041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77983516 77983591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77984419 77984547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGAAGCTGACACGAAAGATGGTCCTGTCCCGAGCCAAGGCTTCGGAGCTGCACAACGTGCGGAAGCTCA
ACTGCTGGGGCAGCCAGCTCACAGATATTTCCATATGCCGGGAGATGCCCAGCCTAGAGGTAATCACACT
CAGTGTCAACAGTGTCTCCACCCTGGAACCGGTGCGCAGCTGCAGGCGCCTGAGCGAGCTGTACCTGAGG
AGGAACCGCATCCCCAGTCTGAACGAGCTGTTCTACCTGAAAGACCTGCCACACCTCAGGGTGCTCTGGC
TGGCCGAGAACCCGTGCTGTGGCACCAGCCCGCACCTTTACCGCATGACCGTGCTGCGCAACCTGCCCCA
CCTGCAGAAGCTAGACAACCAAGCTGTGACCGAGGAAGAGCTGACCCGCGCGCTGATGGAGGGAGATGAG
ATCACTGCCGCCCCGCACAGAGAAGGTGCAGGCAATGGCTGTCCCAAGCCCCCCTACGCCCTCAACTCTG
TCAGCTCTGCAACTGAGACCAGCCAGCACCTGCTGAGCTACACAGAGGAGACAGAAGTCCAGGGCCAGAC
TACCACAGACCAGTCTCCTTCCTTCTCACCAAGGGACACGATGAGGAGTCACAAGAATAGGAACATCCTG
ACTGCCATATTGCTACTGCTGCGGGAGCTGGATACGGAGGGGCTGGAGACTGTCCAGCAGACCGTGGGCA
GCCGGCTACAGGCGCTGCACAGGCCGGAGCCCCAGGAAGACATGGAGTGA

Translation (249 aa):
MKLTRKMVLSRAKASELHNVRKLNCWGSQLTDISICREMPSLEVITLSVNSVSTLEPVRSCRRLSELYLR
RNRIPSLNELFYLKDLPHLRVLWLAENPCCGTSPHLYRMTVLRNLPHLQKLDNQAVTEEELTRALMEGDE
ITAAPHREGAGNGCPKPPYALNSVSSATETSQHLLSYTEETEVQGQTTTDQSPSFSPRDTMRSHKNRNIL
TAILLLLRELDTEGLETVQQTVGSRLQALHRPEPQEDME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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